Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16270 438 / 1e-154 Peroxidase superfamily protein (.1) AT2G18150 321 / 4e-109 Peroxidase superfamily protein (.1) AT5G66390 321 / 5e-109 Peroxidase superfamily protein (.1) AT4G36430 319 / 2e-108 Peroxidase superfamily protein (.1) AT2G35380 318 / 5e-108 Peroxidase superfamily protein (.1.2) AT5G06720 314 / 3e-106 ATPA2 peroxidase 2 (.1) AT2G18140 313 / 8e-106 Peroxidase superfamily protein (.1) AT1G44970 312 / 2e-105 Peroxidase superfamily protein (.1) AT5G05340 311 / 2e-105 Peroxidase superfamily protein (.1) AT3G50990 311 / 9e-105 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G118700 [exp] 330 / 2e-112 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1) Potri.007G019300 [exp] 329 / 3e-112 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.001G145800 [exp] 324 / 3e-110 AT2G35380 458 / 6e-163 Peroxidase superfamily protein (.1.2) Potri.002G031200 [exp] 314 / 5e-106 AT1G44970 492 / 6e-176 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 308 / 3e-104 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.016G132700 [exp] 306 / 1e-103 AT5G05340 367 / 2e-127 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 306 / 3e-103 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.003G214500 [exp] 302 / 1e-101 AT5G19890 422 / 4e-149 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 301 / 2e-101 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017069 [exp] 471 / 1e-167 AT4G16270 392 / 3e-136 Peroxidase superfamily protein (.1) Lus10037786 [exp] 391 / 1e-135 AT4G16270 331 / 8e-112 Peroxidase superfamily protein (.1) Lus10041784 [exp] 325 / 2e-110 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10010634 [exp] 321 / 1e-108 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10034207 [exp] 304 / 1e-102 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10029065 [exp] 301 / 5e-101 AT5G05340 338 / 2e-115 Peroxidase superfamily protein (.1) Lus10009937 [exp] 295 / 4e-99 AT5G05340 347 / 6e-120 Peroxidase superfamily protein (.1) Lus10006534 [exp] 293 / 2e-98 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10030148 [exp] 292 / 3e-98 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10004163 [exp] 293 / 5e-98 AT5G06720 446 / 1e-158 peroxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.008G103200.1 pacid=42808144 polypeptide=Potri.008G103200.1.p locus=Potri.008G103200 ID=Potri.008G103200.1.v4.1 annot-version=v4.1 ATGGCTATGGGCTTAGCCATTTGTTTTATGATGCTTATTAAGCTTGTAATTGCGTTGGCAAAGATACCAACCACCTTGAACACAACATGTGTGGGTGATA TTGGTGTCTTATTGCAGTTTGATGTTTACCAAGAATCCTGCCCAGAGGCAGAACCTATTATACTATCTTGGGTTCAAAGTGCAATCTCCGAGGAACCACG AATGGCAGCTTCCCTGCTTCGTCTTCACTTCCATGATTGCTTTGTTAATGGATGTGATGCTTCAGTGCTGCTAGATGATACTGAGAACTTTGTGGGTGAA AAAACTGCACCACCCAACTTGAATTCACTAAGAGGGTTTGAAGTGATTGATGCCATTAAATCTGATCTGGAATCTGTTTGTCCTGAAACAGTTTCTTGTG CTGATATTCTCGCAATCGTTGCCAGAGATTCTGTTCTTCTATCTGGTGGACCGGGCTGGGAAGTCCAGATGGGGAGGAGGGACAGCTTGACTGCTAGCAA GGCAGCAGCGACTAACAACATCCCTGCTCCAAATTCTAGTGTAGCAACTCTAGTGGCTAATTTTCAGAATGTCGGACTCACACAAAATGATATGGTCGCC CTCTCAGGTGCGCACACAATGGGAAAAGCGAGGTGCTCAACTTTTAGCTCTCGGTTCCAGAGCCCTAGTAACTCCGGTGGCCCTGATGTTAATATGGACT TCGTTCAGTCGCTGCAGCAACTGTGCTCAGAAACTGCTGACAGCACCACGACAGTAGCACATCTTGACCTGGTGACCCCAGCTACATTTGACAACCAATA CTACGTTAATCTTCTTTCAGGAGAGGGATTGCTTCCATCAGACCAGGTTCTTGTGGTTCAAGATGATCGCACACGTGAGATTGTAGAATCTTATGCGGAG GACCCGTTATTGTTCTTTGAGGACTTCAAGAATTCCATGCTCAAAATGGGAGCCTTAGGGCCACTTACTGGTGACAGTGGCGAAATACGTGTGAATTGTA GGGCTGTCAATTAA
AA sequence Show only first row Show all	>Potri.008G103200.1 pacid=42808144 polypeptide=Potri.008G103200.1.p locus=Potri.008G103200 ID=Potri.008G103200.1.v4.1 annot-version=v4.1 MAMGLAICFMMLIKLVIALAKIPTTLNTTCVGDIGVLLQFDVYQESCPEAEPIILSWVQSAISEEPRMAASLLRLHFHDCFVNGCDASVLLDDTENFVGE KTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAIVARDSVLLSGGPGWEVQMGRRDSLTASKAAATNNIPAPNSSVATLVANFQNVGLTQNDMVA LSGAHTMGKARCSTFSSRFQSPSNSGGPDVNMDFVQSLQQLCSETADSTTTVAHLDLVTPATFDNQYYVNLLSGEGLLPSDQVLVVQDDRTREIVESYAE DPLLFFEDFKNSMLKMGALGPLTGDSGEIRVNCRAVN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16270			Peroxidase superfamily protein...		Potri.008G103200 [exp]	0	1
					Potri.018G100100 [exp]	19.89	0.6647
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Potri.005G232650 [exp]	22.27	0.7251
					Potri.015G058750 [exp]	28.14	0.5747
AT5G03980			SGNH hydrolase-type esterase s...		Potri.005G025000 [exp]	33.40	0.7251
AT5G62550			unknown protein		Potri.016G129250 [exp]	35.21	0.7251
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Potri.015G101700 [exp]	37.52	0.7239
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.012G139300 [exp]	38.98	0.4959
AT5G02070			Protein kinase family protein ...		Potri.013G011700 [exp]	40.69	0.7215
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Potri.003G202200 [exp]	42.66	0.7213
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Potri.012G082800 [exp]	46.47	0.7082

Compare expression of checked genes

Potri.008G103200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.