Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49510 295 / 7e-103 PFD3, PDF3 prefoldin 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G147600 [exp] 345 / 6e-123 AT5G49510 293 / 2e-102 prefoldin 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017066 [exp] 311 / 2e-109 AT5G49510 308 / 3e-108 prefoldin 3 (.1.2) Lus10011145 [exp] 303 / 3e-106 AT5G49510 306 / 9e-108 prefoldin 3 (.1.2) Lus10043046 [exp] 300 / 4e-105 AT5G49510 302 / 3e-106 prefoldin 3 (.1.2) Lus10037784 [exp] 228 / 9e-77 AT5G49510 221 / 3e-74 prefoldin 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0200 [poplar] [flax] Prefoldin PF02996 [poplar] [flax] Prefoldin Prefoldin subunit
Representative CDS sequence Show only first row Show all	>Potri.008G103400.1 pacid=42806282 polypeptide=Potri.008G103400.1.p locus=Potri.008G103400 ID=Potri.008G103400.1.v4.1 annot-version=v4.1 ATGGCATCATCATCATCAACAGCAGTAGCAACAGCAACAGAAACAACTACAGAGAGAAGAGGAATACCAGGAGCTCAGTTTGTAGAAGATGTTGAAACCT ATCTTAATCAATCTGGTCTTGATGTCAACTCTGCCCTGTCTTTTCTGCAAGAAAGATTACAGCAATATAAGTTGGTGGAGATGAAACTTCTTGCCCAACA AAGGGATCTTCAGGCAAAGATCCCTGATATAGAGAAGTGCTTAGATGTGGTTGCCACTTTACAGGCTAAGAAGGGTACTGGTGAGCCTCTTATTGCTGAT TTTGAAGTTTCCGAAGGCATATATTCTCAGGCTCGCATTGAGGATGCCGAGTCGGTTTGTTTATGGCTAGGAGCAAATGTCATGTTGGAGTATTCATGTG AAGAGGCCAATGATCTTCTACAAAAGAATTTGGACAACGCTAAAGCTAGTCTAGAAGTTCTAGTTGCCGATCTATTATTCTTAAGGGATCAAGTCACTAT AACACAGGTTACTATTGCCCGCGTGTATAACTGGGATGTTCACCAGAAGCGCAGAATGCGCGAAGCTGTTACTGCTGAGAAAGACTCATGA
AA sequence Show only first row Show all	>Potri.008G103400.1 pacid=42806282 polypeptide=Potri.008G103400.1.p locus=Potri.008G103400 ID=Potri.008G103400.1.v4.1 annot-version=v4.1 MASSSSTAVATATETTTERRGIPGAQFVEDVETYLNQSGLDVNSALSFLQERLQQYKLVEMKLLAQQRDLQAKIPDIEKCLDVVATLQAKKGTGEPLIAD FEVSEGIYSQARIEDAESVCLWLGANVMLEYSCEEANDLLQKNLDNAKASLEVLVADLLFLRDQVTITQVTIARVYNWDVHQKRRMREAVTAEKDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Potri.008G103400 [exp]	0	1
AT1G13380			Protein of unknown function (D...		Potri.010G124800 [exp]	2.82	0.8120
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Potri.012G137800 [exp]	3.87	0.7767	MP2.4
AT1G26520			Cobalamin biosynthesis CobW-li...		Potri.008G094100 [exp]	4.79	0.7067
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Potri.007G018000 [exp]	5.29	0.7767	Pt-TRXH.1,PtrTrxh4
AT4G38800		ATMTN1, ATMTAN1	ARABIDOPSIS METHYLTHIOADENOSIN...		Potri.004G167200 [exp]	6.92	0.7583
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Potri.002G229100 [exp]	8.12	0.7078
AT2G33630			NAD(P)-binding Rossmann-fold s...		Potri.002G005100 [exp]	10.19	0.6993
AT2G32520			alpha/beta-Hydrolases superfam...		Potri.014G155200 [exp]	10.39	0.7338
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.001G311000 [exp]	12.00	0.7780
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Potri.001G197900 [exp]	12.32	0.7506

Compare expression of checked genes

Potri.008G103400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.