Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49010 277 / 2e-95 EMB2812, SLD5 SYNTHETIC LETHALITY WITH DPB11-1 5, EMBRYO DEFECTIVE 2812, DNA replication protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G147050 [exp] 269 / 2e-92 AT5G49010 162 / 2e-50 SYNTHETIC LETHALITY WITH DPB11-1 5, EMBRYO DEFECTIVE 2812, DNA replication protein-related (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017669 [exp] 376 / 3e-134 AT5G49010 259 / 4e-88 SYNTHETIC LETHALITY WITH DPB11-1 5, EMBRYO DEFECTIVE 2812, DNA replication protein-related (.1.2) Lus10033618 [exp] 372 / 1e-132 AT5G49010 254 / 5e-86 SYNTHETIC LETHALITY WITH DPB11-1 5, EMBRYO DEFECTIVE 2812, DNA replication protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05916 [poplar] [flax] Sld5 GINS complex protein PF16922 [poplar] [flax] SLD5_C DNA replication complex GINS protein SLD5 C-terminus
Representative CDS sequence Show only first row Show all	>Potri.008G103800.1 pacid=42806087 polypeptide=Potri.008G103800.1.p locus=Potri.008G103800 ID=Potri.008G103800.1.v4.1 annot-version=v4.1 ATGGCTACGGAGGAATCAGCGAGCGTGATGGATGATTATGAGACGTTGATTTCGACGACCGATGTTGAGCTCTTGAAAAGAGCGTGGCGTAACGAGAAAG CTGCTCCGGAGATTCTTCAATTTGAATCTTCTTTAGTTCAAAGAATCAAAGAGCAAATCGAATTAGCGGAACAAAATGTGGAAATATCCGAAGCAAATAA TATAGATCCACTCACTGTGTCGCTTTACCAAATGGACTTGGATAGGACTCAATTTTTGCTGAGATCATATCTTCGGGTTCGTCTTCAGAAGATTGAGAAG TACTTGTTCTATGTTTTGAAAACTGATGAGTATCTAAACCGGCTTTCTAAGCAGGAGCAAATGTTTGCAAGAAGGTGCACGGATGATTTGGGAAGCCATC TTGATGAGACTGTTTTGGCGAAGTTGCCTGATAATTACCAGTCCATATTAAAGCAATCTATAACCAGTGAAGAGGATGATATGGTGCCAGTGCCCCGACT TGACACATTCGTTATCTGCAAAGCCAAGCAATATCTTTCTGGCCTTGACTTTGAGCCTGAGTACAGCATGGAAATCACAGAGATGGAGCGCGACTTACTT ACCTTTGTATGTTACAAGTTCATAAAGAAGCCTCTAGAGAATGGGAAGATAGATTTGGTCTAA
AA sequence Show only first row Show all	>Potri.008G103800.1 pacid=42806087 polypeptide=Potri.008G103800.1.p locus=Potri.008G103800 ID=Potri.008G103800.1.v4.1 annot-version=v4.1 MATEESASVMDDYETLISTTDVELLKRAWRNEKAAPEILQFESSLVQRIKEQIELAEQNVEISEANNIDPLTVSLYQMDLDRTQFLLRSYLRVRLQKIEK YLFYVLKTDEYLNRLSKQEQMFARRCTDDLGSHLDETVLAKLPDNYQSILKQSITSEEDDMVPVPRLDTFVICKAKQYLSGLDFEPEYSMEITEMERDLL TFVCYKFIKKPLENGKIDLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Potri.008G103800 [exp]	0	1
AT4G30030			Eukaryotic aspartyl protease f...		Potri.018G106500 [exp]	14.38	0.8843
AT5G20890			TCP-1/cpn60 chaperonin family ...		Potri.006G128600 [exp]	20.73	0.8647
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Potri.009G061700 [exp]	30.85	0.8614	HF.2
AT5G63830			HIT-type Zinc finger family pr...		Potri.001G085800 [exp]	72.24	0.8516
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Potri.014G116800 [exp]	102.44	0.7938	GOLS2.1
AT1G68780			RNI-like superfamily protein (...		Potri.008G114700 [exp]	108.14	0.8487
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Potri.004G104800 [exp]	108.76	0.8190
AT3G50560			NAD(P)-binding Rossmann-fold s...		Potri.007G040900 [exp]	110.93	0.8489
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.019G081300 [exp]	115.99	0.8470
AT3G24130			Pectin lyase-like superfamily ...		Potri.017G054700 [exp]	128.68	0.8374

Compare expression of checked genes

Potri.008G103800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.