Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CP1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49480 153 / 5e-48 ACP1, ATCP1 Ca2+-binding protein 1, Ca2+-binding protein 1, Ca2+-binding protein 1 (.1) AT4G37010 57 / 2e-10 CEN2 centrin 2 (.1.2) AT3G22930 57 / 2e-10 CML11 calmodulin-like 11 (.1) AT5G37770 56 / 3e-10 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT4G14640 55 / 9e-10 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT1G66400 54 / 2e-09 CML23 calmodulin like 23 (.1) AT2G43290 52 / 2e-08 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT3G56800 51 / 2e-08 ACAM-3, CAM3 calmodulin 3 (.1) AT2G27030 51 / 2e-08 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT2G41110 51 / 2e-08 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G146900 [exp] 263 / 2e-91 AT5G49480 157 / 2e-49 Ca2+-binding protein 1, Ca2+-binding protein 1, Ca2+-binding protein 1 (.1) Potri.010G080900 [exp] 62 / 1e-12 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.008G159300 [exp] 59 / 4e-11 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.005G052800 [exp] 56 / 2e-10 AT4G14640 228 / 7e-78 calmodulin-like 8, calmodulin 8 (.1) Potri.012G041000 [exp] 53 / 3e-09 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.013G040300 [exp] 53 / 4e-09 AT3G22930 210 / 1e-70 calmodulin-like 11 (.1) Potri.015G032600 [exp] 52 / 9e-09 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.005G138000 [exp] 51 / 2e-08 AT3G50360 275 / 4e-96 CENTRIN 1, centrin2 (.1) Potri.012G048200 [exp] 48 / 3e-07 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017063 [exp] 157 / 3e-49 AT5G49480 164 / 2e-52 Ca2+-binding protein 1, Ca2+-binding protein 1, Ca2+-binding protein 1 (.1) Lus10037781 [exp] 151 / 5e-47 AT5G49480 161 / 3e-51 Ca2+-binding protein 1, Ca2+-binding protein 1, Ca2+-binding protein 1 (.1) Lus10039391 [exp] 56 / 3e-10 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10014709 [exp] 56 / 6e-10 AT4G14640 162 / 4e-52 calmodulin-like 8, calmodulin 8 (.1) Lus10014708 [exp] 55 / 9e-10 AT4G14640 163 / 2e-52 calmodulin-like 8, calmodulin 8 (.1) Lus10004088 [exp] 54 / 2e-09 AT4G14640 159 / 5e-51 calmodulin-like 8, calmodulin 8 (.1) Lus10001775 [exp] 52 / 1e-08 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3) Lus10019863 [exp] 51 / 4e-08 AT2G15680 233 / 9e-79 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10009176 [exp] 49 / 1e-07 AT2G27030 186 / 3e-61 calmodulin 5 (.1.2.3) Lus10014050 [exp] 48 / 4e-07 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.008G103900.1 pacid=42808318 polypeptide=Potri.008G103900.1.p locus=Potri.008G103900 ID=Potri.008G103900.1.v4.1 annot-version=v4.1 ATGTGCCCATATGGGACAAGTCTAGCTGCAGGGACCAAACGGGGTGGTGCAAGATCAGATTTCAGGCCAGCATTTGATGTTCTTGATGCAGACCATGACG GGAAGATAAGCAAAGATGATCTTCGCATGTTTTATGCAGGGTTTTCAAGTAATGGTGCCGATGATGATTTTATAGGCTCAATGATGTCTGTTGCGGATTT TAACAAAGATGGGTTTGTTGAGTATGATGAATTTGAACGTGTTTTGGATGGTGCTAGTGAAAAGAAGAAATCTTCATCGTCAACAAGGTCTAGTTCTGGG GTTATGGAGGATGTATTTAAGGTCATGGATAAAGACGGGGATGGAAAACTGAGTGTCGATGATCTGAAGAGTTATATGCAATGGGCAGGGTTTGATGCTT CTGATGATGATATTAAAGCTATGATAAAATCGGCTTGTTATTCTGGCGGCGGTGATAAAGATGGCGTCACTTATGATGATTTCCTTAAGATTTTGGCTCT TGATAATTCTTCTGCTGCATAG
AA sequence Show only first row Show all	>Potri.008G103900.1 pacid=42808318 polypeptide=Potri.008G103900.1.p locus=Potri.008G103900 ID=Potri.008G103900.1.v4.1 annot-version=v4.1 MCPYGTSLAAGTKRGGARSDFRPAFDVLDADHDGKISKDDLRMFYAGFSSNGADDDFIGSMMSVADFNKDGFVEYDEFERVLDGASEKKKSSSSTRSSSG VMEDVFKVMDKDGDGKLSVDDLKSYMQWAGFDASDDDIKAMIKSACYSGGGDKDGVTYDDFLKILALDNSSAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49480		ACP1, ATCP1	Ca2+-binding protein 1, Ca2+-b...		Potri.008G103900 [exp]	0	1	Pt-CP1.2
AT1G12450			SNARE associated Golgi protein...		Potri.001G114600 [exp]	2.44	0.7763
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Potri.006G086000 [exp]	2.82	0.7952
AT5G49480		ACP1, ATCP1	Ca2+-binding protein 1, Ca2+-b...		Potri.010G146900 [exp]	4.47	0.7688	Pt-CP1.1
					Potri.001G323200 [exp]	8.00	0.7990
AT3G47300		SELT	SELT-like protein precursor (....		Potri.009G047000 [exp]	16.24	0.7540
AT1G17080			Ribosomal protein L18ae family...		Potri.001G380200 [exp]	27.69	0.7319
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.016G030900 [exp]	40.39	0.7260
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Potri.015G027300 [exp]	52.99	0.7510
AT1G34300			lectin protein kinase family p...		Potri.013G096300 [exp]	55.15	0.7661
AT5G20190			Tetratricopeptide repeat (TPR)...		Potri.018G130100 [exp]	65.40	0.7539

Compare expression of checked genes

Potri.008G103900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.