Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17090 568 / 0 Protein phosphatase 2C family protein (.1.2) AT4G38520 449 / 1e-157 Protein phosphatase 2C family protein (.1.2) AT3G51370 441 / 7e-155 Protein phosphatase 2C family protein (.1.2) AT5G66080 438 / 1e-153 Protein phosphatase 2C family protein (.1) AT3G12620 431 / 5e-151 Protein phosphatase 2C family protein (.1.2) AT3G55050 431 / 6e-151 Protein phosphatase 2C family protein (.1.2) AT5G02760 382 / 1e-131 Protein phosphatase 2C family protein (.1) AT5G06750 369 / 3e-126 Protein phosphatase 2C family protein (.1.2.3) AT4G33920 362 / 8e-124 Protein phosphatase 2C family protein (.1) AT3G16560 143 / 3e-38 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G146700 [exp] 698 / 0 AT3G17090 554 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 466 / 1e-164 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 462 / 7e-163 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 451 / 1e-158 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 451 / 2e-158 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G214700 [exp] 437 / 2e-153 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 436 / 1e-152 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G082800 [exp] 404 / 2e-140 AT3G12620 502 / 4e-179 Protein phosphatase 2C family protein (.1.2) Potri.006G192600 [exp] 397 / 2e-137 AT5G06750 572 / 0.0 Protein phosphatase 2C family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037779 [exp] 611 / 0 AT3G17090 562 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10017061 [exp] 474 / 3e-169 AT3G17090 426 / 1e-150 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 461 / 4e-162 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 457 / 6e-161 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10041861 [exp] 455 / 4e-160 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10025076 [exp] 451 / 2e-158 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10024008 [exp] 449 / 2e-157 AT4G38520 605 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 439 / 5e-154 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 435 / 2e-152 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10030302 [exp] 425 / 2e-148 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.008G104300.1 pacid=42808207 polypeptide=Potri.008G104300.1.p locus=Potri.008G104300 ID=Potri.008G104300.1.v4.1 annot-version=v4.1 ATGCTTCAGGCATTGATGAATCTGTTTTCGTTATGTCTTAAGCCATTTGGGCATGGTAGAAGTAGTAGTAACAGTGATTCAAAGCTTGAGTCATTTGTCG GTGTTAGCAAAGAAGGGAAAGATGGTTTGCTTTGGTATAGAGACGTTGGAAGATACTGGTCTGGTGAATTTTCAATGGCTGTTGTTCAAGCTAATCAAGT AATTGAAGACCAAAGCCAGATTGAGTCTGGACCTTTTGGAACTTTTGTTGGTGTTTATGATGGTCACGGTGGACCTGAAGCTGCACGTTTTGTCTGTGAT CACTTGTTCAGGCACTTTCAAGCCATTTCAGCAGAGACACATGGTGTTGTGACAAGCGAGACCATCCAAAGAGCTTTCTGTGCAACAGAGGAAGGGTTTA CCAATCTCGTGTCAGAGTTATGGAGCAGTCGTCCCCAAATGGCAACAGTTGGATCATGCTGTTTAGTTGGAGTGATATATCAGCAGACCCTCTTTGTAGC AAACCTGGGAGATTCCCGTGTTGTACTGGGCAAGAAAGTCGGCAACACTGGAGGTATTGCTGCAATACAATTATCAACTGAGCATAATGCAAACCTTGAG GTCATCAGGCATGAACTCAAGAACTTACATCCTAATGATCCCCAGATTGTTGTTCTTAAGCATGGAGTTTGGAGAGTAAAGGGGATTATTCAGGTTTCTA GATCCATAGGGGATGTGTATATGAAACATGCACGATTCAACAGGGAACCAATTAATGCCAAGTTCAGACTTCCTGAACCAATGGACAAGTCAATCTTGAG TGCCAATCCAACAATCATTTCACATCCTCTCCATCCAAATGATTCGTTCCTTGTATTTGCATCTGATGGTCTTTGGGAACACTTGAGTAATGAAAAAGTA GTGGATATTGTCCACAGTAATCCATGTGCAGGAAGTGCCAAGAGGCTTGTCAAGGCCGCCTTACAAGAAGCGGCTAGAAAAAGAGAAATGAGATATTCAG ATCTACAGAAGATTGACAAGAAGGTTCGACGACACTTTCATGACGATATAACTGTAATTGTTTTATTCTTAAACCATGATCTTATATCCAAATCCAAAAG CGCTGTGCAAACACCGCCGGTTTCCATCCGAAGCGCTAATTAA
AA sequence Show only first row Show all	>Potri.008G104300.1 pacid=42808207 polypeptide=Potri.008G104300.1.p locus=Potri.008G104300 ID=Potri.008G104300.1.v4.1 annot-version=v4.1 MLQALMNLFSLCLKPFGHGRSSSNSDSKLESFVGVSKEGKDGLLWYRDVGRYWSGEFSMAVVQANQVIEDQSQIESGPFGTFVGVYDGHGGPEAARFVCD HLFRHFQAISAETHGVVTSETIQRAFCATEEGFTNLVSELWSSRPQMATVGSCCLVGVIYQQTLFVANLGDSRVVLGKKVGNTGGIAAIQLSTEHNANLE VIRHELKNLHPNDPQIVVLKHGVWRVKGIIQVSRSIGDVYMKHARFNREPINAKFRLPEPMDKSILSANPTIISHPLHPNDSFLVFASDGLWEHLSNEKV VDIVHSNPCAGSAKRLVKAALQEAARKREMRYSDLQKIDKKVRRHFHDDITVIVLFLNHDLISKSKSAVQTPPVSIRSAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17090			Protein phosphatase 2C family ...		Potri.008G104300 [exp]	0	1
AT5G48450		SKS3	SKU5 similar 3 (.1)		Potri.014G177700 [exp]	2.23	0.8617
					Potri.018G101800 [exp]	6.16	0.8121
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.001G162400 [exp]	8.71	0.7975
AT3G13000			Protein of unknown function, D...		Potri.006G216800 [exp]	11.66	0.7731
AT3G58690			Protein kinase superfamily pro...		Potri.014G143100 [exp]	12.60	0.8007
AT1G75060			unknown protein		Potri.002G133500 [exp]	13.22	0.7756
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Potri.002G108000 [exp]	16.61	0.6827	Pt-IAA8.4
AT5G13760			Plasma-membrane choline transp...		Potri.001G261900 [exp]	19.05	0.7656
					Potri.016G013000 [exp]	19.36	0.7562
AT4G38670			Pathogenesis-related thaumatin...		Potri.009G132200 [exp]	27.20	0.7463

Compare expression of checked genes

Potri.008G104300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.