Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16210 422 / 3e-151 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) AT5G43280 102 / 4e-26 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT1G60550 103 / 7e-26 ECHID, DHNS enoyl-CoA hydratase/isomerase D (.1) AT4G16800 98 / 8e-24 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G29010 84 / 3e-18 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) AT3G06860 83 / 9e-18 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1) AT2G30660 80 / 5e-17 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G65940 75 / 2e-15 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT2G30650 71 / 5e-14 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT1G06550 70 / 1e-13 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G146400 [exp] 501 / 0 AT4G16210 418 / 2e-149 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Potri.001G153300 [exp] 118 / 2e-31 AT4G16800 346 / 8e-120 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.001G061000 [exp] 102 / 7e-26 AT5G43280 379 / 1e-133 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Potri.008G220400 [exp] 105 / 2e-25 AT3G06860 1161 / 0.0 multifunctional protein 2 (.1) Potri.010G011900 [exp] 98 / 7e-23 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1) Potri.001G329900 [exp] 95 / 2e-22 AT1G60550 550 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Potri.018G082900 [exp] 87 / 5e-19 AT4G29010 1094 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Potri.014G179000 [exp] 78 / 3e-16 AT5G65940 556 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G018800 [exp] 76 / 2e-15 AT4G31810 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016920 [exp] 424 / 5e-152 AT4G16210 395 / 1e-140 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10037777 [exp] 379 / 3e-131 AT4G16210 360 / 1e-123 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10016919 [exp] 229 / 2e-76 AT4G16210 206 / 1e-67 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10013023 [exp] 106 / 9e-27 AT1G60550 514 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Lus10011336 [exp] 103 / 6e-26 AT5G43280 404 / 8e-144 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10029142 [exp] 103 / 2e-25 AT1G60550 512 / 0.0 enoyl-CoA hydratase/isomerase D (.1) Lus10002583 [exp] 100 / 6e-25 AT5G43280 399 / 1e-141 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Lus10006501 [exp] 96 / 8e-23 AT3G06860 504 / 4e-175 multifunctional protein 2 (.1) Lus10037495 [exp] 96 / 3e-22 AT3G06860 1170 / 0.0 multifunctional protein 2 (.1) Lus10043224 [exp] 84 / 7e-18 AT4G29010 1063 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [poplar] [flax] ClpP_crotonase PF16113 [poplar] [flax] ECH_2 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Potri.008G104500.1 pacid=42807263 polypeptide=Potri.008G104500.1.p locus=Potri.008G104500 ID=Potri.008G104500.1.v4.1 annot-version=v4.1 ATGGATCAAACCAGAATTGAAAACCTTATCCTGGTCACTCGAGACCAAAACGGCATCGCAACGATCACAATAAACCGTCCCAAATCGCTGAACTCCTTGA CGAGGCCTATGATAGTTCGCTTAGCCCGTCAAATCAATGCCTTAGGTAAGGACGACTCAGTTCGGGTCATCATTTTGACGGGATCGGGTCGGGCTTTCTG TTCGGGTGTGGATCTGACTGCCGCGGAGGAGGTGTTTAAAGGGGATGTAAAGGACGTGGAGGCCGACCCGGTTGCCCAAATGGAGCAGTGCAAAAAGCCC ATTATTGGAGCTATTAATGGGTTTGCAGTTACCGCCGGGTTTGAAATTGCACTTGCTTGTGATATTTTGATCGCTTCTAAAGGAGCTAAGTTTATGGATA CACATTCAAGGTTTGGGATATTTCCTTCATGGGGCCTCTCGCAGAAGCTTTCACGCGTTATAGGGGCAAACAGGGCACGGGAAGCATCTCTAACGGCCAT GCCAATTTCTGGTGAGCAAGCTGAGAGGTGGGGCTTGGTTAACCATGCTGTGGAAGAAGGTAAAGTGTTGAAGAAAGCCCGAGAAGTTGCAGAGGCCATT ATAAAAAATAATCAAGACATGGTGTTGAAATACAAGGCCGTTATAAATGATGGCCTGAAGCTGGACCTGGCTCATGCTCTTTCTCTAGAGAAGGAGAGGG CTCACGCCTACTACAATGGCATGACTAAGGACCAGTTCCAGAAGATGCAGGAATTCATAGCTGGTCGGAGCTCCAAGACACCTTCTTCAAAGTTGTAA
AA sequence Show only first row Show all	>Potri.008G104500.1 pacid=42807263 polypeptide=Potri.008G104500.1.p locus=Potri.008G104500 ID=Potri.008G104500.1.v4.1 annot-version=v4.1 MDQTRIENLILVTRDQNGIATITINRPKSLNSLTRPMIVRLARQINALGKDDSVRVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVEADPVAQMEQCKKP IIGAINGFAVTAGFEIALACDILIASKGAKFMDTHSRFGIFPSWGLSQKLSRVIGANRAREASLTAMPISGEQAERWGLVNHAVEEGKVLKKAREVAEAI IKNNQDMVLKYKAVINDGLKLDLAHALSLEKERAHAYYNGMTKDQFQKMQEFIAGRSSKTPSSKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Potri.008G104500 [exp]	0	1
AT2G27510		ATFD3	ferredoxin 3 (.1)		Potri.010G239100 [exp]	6.70	0.6614	PETF.5
AT5G19440			NAD(P)-binding Rossmann-fold s...		Potri.009G057500 [exp]	76.15	0.6268	CCR.8
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Potri.006G025400 [exp]	208.38	0.6042
AT1G61620			phosphoinositide binding (.1)		Potri.011G040000 [exp]	219.64	0.5704

Compare expression of checked genes

Potri.008G104500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.