Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23540 371 / 2e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 366 / 1e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G16230 330 / 2e-113 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 291 / 2e-96 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 269 / 1e-87 GLIP7 GDSL-motif lipase 7 (.1) AT1G29670 268 / 2e-87 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 265 / 3e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 260 / 5e-84 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 260 / 7e-84 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 253 / 2e-81 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G036300 [exp] 377 / 3e-130 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104700 [exp] 348 / 1e-118 AT2G23540 280 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G216400 [exp] 287 / 2e-95 AT2G23540 240 / 1e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 272 / 7e-89 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 272 / 8e-89 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 262 / 5e-85 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G068700 [exp] 259 / 7e-84 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 256 / 1e-82 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.017G130100 [exp] 251 / 4e-81 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005236 [exp] 491 / 8e-175 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005238 [exp] 489 / 6e-174 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 481 / 2e-170 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016775 [exp] 395 / 4e-137 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10022471 [exp] 393 / 5e-136 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030684 [exp] 293 / 3e-97 AT2G23540 244 / 2e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 263 / 2e-85 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 262 / 5e-85 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 260 / 6e-84 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10011998 [exp] 259 / 8e-84 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.008G104600.2 pacid=42805752 polypeptide=Potri.008G104601.1.p locus=Potri.008G104600 ID=Potri.008G104600.2.v4.1 annot-version=v4.1 ATGGATATCCTCTTAAATAAACGAGGAAATGCGTGGATAATGTCTCAAGTACTGACAATCTTTGTATTGTCAAGGGTCAGCATTGCAAACAGTACTGTTC CTGCGAATTTTATTCTTGGTGACTCCTTGGTTGATGCTGGAAACAACAACTACATCGTGTCACTGTCTAAAGCTAACTACATCCCAAATGGGATTGATTT TGGAAGGCCAACAGGAAGGTACACCAATGGAAGAACCATTGCTGACATTATAGGTCAGGAATTGGGTTTTGAAGATTTCACTCCTCCTTTCTTGGCTCCT ACAACAGTGGGATCTGTGGTTTTGAGGGGTGTCAATTATGCTTCTGGTGGAGGTGGAATTCTTAATTACACTGGAAAGATTTTTGGTGGTCGGATCAACT TGGATGCGCAGATTGATAACTTCGCAAACACCAGGCAAGGCATAATTGCAAGCATTGGTGCTCCTGCAACTCTGAGTCTGCTTAAAATGTCTCTCTTCGC AGTTGTTATTGGCTCAAACGATTTTATCAACAACTACTTGACACCAGTCGTCTCAGCCGTAGAGCAGAAGGTGGTAGCTCCAGACGTGTTTGTAGATACC ATGGTGGCAAGATTCAGATTACAACTCACGAGGCTCTACAATTTGGGTGCTAGAAAGATTCTTGTGGCAAATGTCGGTCCATTTGGGTGTATACCATATC AGAGAGATACAAATCCAGCCGCAGGAGACAACTGTGTTAGTTTTTCCAATCAGATAGCCCAGCTATATAACACAGAGTTAAGAAGCCTTGTCACTGAACT TGGTGCAAATCTGGAGGGATCAAATTTTGTTTACGCAGATGTTTACCGCATTGTCAATGACATCCTGCAAAATTATAGATCATATGGATTTGAGAACGCA AATGCATCATGCTGCTATGCTGCCGGGCACTTTGGTGGTCTGATACCATGTGGCCCTTCATCAAAAGTTTGCTTCGACAGGTCCAAGTACGTTTTCTGGG ATCCATACCATCCTTCTGACGCTGCTAATGTGATCATAGCGAAACGGCTATTAGATGGTGACTCCAATGACATTTCACCGCTGAACATTCGTCGGCTCGC TACAATTTGA
AA sequence Show only first row Show all	>Potri.008G104600.2 pacid=42805752 polypeptide=Potri.008G104601.1.p locus=Potri.008G104600 ID=Potri.008G104600.2.v4.1 annot-version=v4.1 MDILLNKRGNAWIMSQVLTIFVLSRVSIANSTVPANFILGDSLVDAGNNNYIVSLSKANYIPNGIDFGRPTGRYTNGRTIADIIGQELGFEDFTPPFLAP TTVGSVVLRGVNYASGGGGILNYTGKIFGGRINLDAQIDNFANTRQGIIASIGAPATLSLLKMSLFAVVIGSNDFINNYLTPVVSAVEQKVVAPDVFVDT MVARFRLQLTRLYNLGARKILVANVGPFGCIPYQRDTNPAAGDNCVSFSNQIAQLYNTELRSLVTELGANLEGSNFVYADVYRIVNDILQNYRSYGFENA NASCCYAAGHFGGLIPCGPSSKVCFDRSKYVFWDPYHPSDAANVIIAKRLLDGDSNDISPLNIRRLATI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Potri.008G104600 [exp]	0	1
AT5G44680			DNA glycosylase superfamily pr...		Potri.001G074700 [exp]	9.59	0.9443
AT2G46640			unknown protein		Potri.014G102600 [exp]	19.79	0.9261
AT4G38840			SAUR-like auxin-responsive pro...		Potri.009G126700 [exp]	20.73	0.9432
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G151200 [exp]	23.81	0.9319	SP1.2
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Potri.019G024400 [exp]	29.06	0.9286
AT3G52500			Eukaryotic aspartyl protease f...		Potri.009G162400 [exp]	29.39	0.9311
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Potri.003G094400 [exp]	31.11	0.9239
AT5G22430			Pollen Ole e 1 allergen and ex...		Potri.009G019300 [exp]	37.74	0.9149
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.019G093900 [exp]	40.29	0.9257
AT2G42840		PDF1	protodermal factor 1 (.1)		Potri.005G200900 [exp]	42.76	0.9135

Compare expression of checked genes

Potri.008G104600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.