Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23540 280 / 1e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 273 / 8e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 234 / 5e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 234 / 7e-74 GLIP7 GDSL-motif lipase 7 (.1) AT4G16230 218 / 2e-69 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G04290 219 / 3e-68 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT1G71691 217 / 3e-67 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G08460 215 / 2e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 210 / 1e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G28780 209 / 2e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G216400 [exp] 353 / 3e-121 AT2G23540 240 / 1e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104600 [exp] 348 / 2e-118 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G036300 [exp] 298 / 1e-98 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G051100 [exp] 235 / 3e-74 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024800 [exp] 230 / 3e-72 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G089700 [exp] 229 / 7e-72 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 226 / 8e-71 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G076600 [exp] 224 / 6e-70 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024600 [exp] 220 / 2e-68 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005238 [exp] 339 / 8e-115 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005236 [exp] 331 / 1e-111 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 324 / 1e-108 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10022471 [exp] 304 / 4e-101 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016775 [exp] 303 / 1e-100 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 225 / 4e-70 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10002775 [exp] 207 / 1e-63 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039877 [exp] 204 / 3e-62 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10001643 [exp] 204 / 3e-62 AT1G74460 530 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021664 [exp] 203 / 8e-62 AT1G74460 526 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.008G104700.1 pacid=42806621 polypeptide=Potri.008G104701.1.p locus=Potri.008G104700 ID=Potri.008G104700.1.v4.1 annot-version=v4.1 ATGAACAAGTCATTTCCTCTCTTATGTCCCAGAGGACTGTTGATGGGTTTTGTATCAGGAAGATGCGTTGTTATAGGTGTGATACTGCATATGGCAACAG CCTCTTTTTTGTTCAGTATCTGCTCAGCAAAGGATCCTCCTGCTCTTTATATATTTGGAGATTCACTGGTTGATGCAGGAAACAACTTCTACATTAATAC AGCAGCAAAAGCAAATTTTCCTAATGGGATTGATTTTGGGAATCCAATAGGAATTCCATCTGGGCGATTTACAAATGGTAGAATGGTAACTGATATCTTA GGAGAAGAAGTGGGGTTGCCTAGTTTAACTCCTCCTTACCTGGCTCCGACAACCACTGGAGATGTGATTCTGAAGGGTGTCAATTATGCTTCTTCAGCAT CGGGAATTTTAAATGATACTGAACGGTTCTTCGGTCATCAAATCCACTTGGACACACAAATCAGCAACTTCGTAAAGACTAGACAAGACATCATCTCAAG AATCGGTTCACAAGCAGCTAAAGAGCAGTTTAAACAGGCTATCTTTTTTGTTTCAATTGGCTCAAATGACATCATATTTAGCCAATGGCAGAATTCATCA TCTTGGAATACATTACTTGACACTATAATTTCAAGATTCAAATCACAACTTGTTAGACTCTACAATCTGGATGCCAGAAAGTTTATAGTTACAAATTCTG CTGCTGTTGGATGCATCCCTTTCGTTAGAGATCTACATTCATCTGTAGATAGCTGTGTTGCTGTCATGAATCAGAAAGCACAGTTATTCAATAGCCGATT GAATAGCCTGCTAGCGGAACTCACCAAAAATCTCGAGGCATCAACTTTTATTTGTGCAAATGTTTATGCAATGCTAGATGATATTCTCAATAACTACATG ACATCATATGACTTTGAAGTTGCAGATTCGGCGTGCTGTCATATTGCTGGAGCTGGACTACATGGGGGTTTAATTCCATGCGGAATTCTATCTCAAGTTT GTCCCGACAGATCCAAGTATGTGTTCTGGGATCCATTCCATCTAACCGAAACTTCTTACGAAATCATAGCGAAACATATGATGGATGGTGACTTGAATTA TATTTCACCTATGAACATTAGGCAGCTTCTGAATTATTGA
AA sequence Show only first row Show all	>Potri.008G104700.1 pacid=42806621 polypeptide=Potri.008G104701.1.p locus=Potri.008G104700 ID=Potri.008G104700.1.v4.1 annot-version=v4.1 MNKSFPLLCPRGLLMGFVSGRCVVIGVILHMATASFLFSICSAKDPPALYIFGDSLVDAGNNFYINTAAKANFPNGIDFGNPIGIPSGRFTNGRMVTDIL GEEVGLPSLTPPYLAPTTTGDVILKGVNYASSASGILNDTERFFGHQIHLDTQISNFVKTRQDIISRIGSQAAKEQFKQAIFFVSIGSNDIIFSQWQNSS SWNTLLDTIISRFKSQLVRLYNLDARKFIVTNSAAVGCIPFVRDLHSSVDSCVAVMNQKAQLFNSRLNSLLAELTKNLEASTFICANVYAMLDDILNNYM TSYDFEVADSACCHIAGAGLHGGLIPCGILSQVCPDRSKYVFWDPFHLTETSYEIIAKHMMDGDLNYISPMNIRQLLNY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Potri.008G104700 [exp]	0	1
AT5G66120			3-dehydroquinate synthase, put...		Potri.005G110900 [exp]	7.74	0.7411
AT3G47570			Leucine-rich repeat protein ki...		Potri.005G030800 [exp]	13.49	0.6533	RGA.58
AT3G18570			Oleosin family protein (.1)		Potri.012G059400 [exp]	24.24	0.6702
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Potri.009G003100 [exp]	25.80	0.7202
AT1G12480		SLAC1, RCD3, CD...	SLOW ANION CHANNEL-ASSOCIATED ...		Potri.001G114300 [exp]	32.98	0.6701
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Potri.002G216400 [exp]	57.91	0.6291
AT1G78210			alpha/beta-Hydrolases superfam...		Potri.002G097400 [exp]	59.46	0.6013
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.016G113300 [exp]	75.39	0.6359
AT2G39690			Protein of unknown function, D...		Potri.010G202900 [exp]	133.94	0.5954
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Potri.011G004700 [exp]	176.18	0.6044

Compare expression of checked genes

Potri.008G104700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.