Plant FIBer expression Database

Potri.008G104900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G104900.2 pacid=42806066 polypeptide=Potri.008G104900.2.p locus=Potri.008G104900 ID=Potri.008G104900.2.v4.1 annot-version=v4.1
ATGGGGAAATTTTCAAGCAAGTATGTTGGCGTTTTAGCTGTGATATTTGTTTTAGTGCTAGGTATAGCAGAATGTAGAAAAATAGAGAAAGATGGCTTTG
GAGATGGTGCTGGGGGAGGTGGAGGCTTTGGTGGTGGTGCTGGTCTAGGTGGTGGTGGAGGAGGTGTTGGAGGAGGAGGCGGTGCTGGTGGTGGCTTCGG
AGGAGGCAAGGGTGGTGGTGTAGGAATTGGAGGAGGCAAAGGTGGAGGGGTTGGGGGTGGTGTAGGTGGGGGTGCTGGTGGTGGCATTGGAGGTGGAGCC
GGGGGAGGAGGTGGTGCCGGTGGGGGTGCTGGTGGAGGTATTGGAGGTGGAGGAGGCAAAGGTGGAGGGTTTGGAGGTGGTGCCGGTGGGGGTGCTGGTG
GAGGTATTGGAGGAGGCAAAGGTGGAGGGGTTGGAGGTGGTGTAGGTGGGGGTTCTGGTGGAGGTATTGGAGGAGGCAAAGGTGGAGGGTTTGGAGGTGG
TGTAGGTGGGGGTTCTGGTGGTGGCATTGGAGGTGGAGCCGGGGGAGGTGGTGGAGCTGGTGGGGGCGCTGGTGGTGGCGCTGGTGGTGGTGGAGGTATT
GGAGGAGGCAAAGGTGGAGGGGTTGGAGGTGGTGTAGGTGGGGGTTCTGGTGGTGGAATTGGAGGTGGAGCCGGGGGAGGTGGTGGAGTTGGAGTTGGTG
CTGGTGGGGGCGCTGGTGGTGGTGGAGGTATTGGAGGAGGCAAAGGTGGAGGGGTTGGAGGTGGTGTAGGTGGGGGTTCTGGTGGTGGTTTTGGTGGTGG
AGCCGGGGGAGGTGGCGGAGTTGGAGGGGGTGCTGGTGGTGGCATCGGAGGTGGTGCTGGTGGCGGAAAAGGTGGTGGTGCAGGAGGAGGATTTGGTGGG
GGAGCTGGAGGTGGTGCTGGTGGTGGCTTCGGAGGAGGAGGAGGTTTCGGTGGAGGAAGTGGCGGTGGGCATTAA
AA sequence
>Potri.008G104900.2 pacid=42806066 polypeptide=Potri.008G104900.2.p locus=Potri.008G104900 ID=Potri.008G104900.2.v4.1 annot-version=v4.1
MGKFSSKYVGVLAVIFVLVLGIAECRKIEKDGFGDGAGGGGGFGGGAGLGGGGGGVGGGGGAGGGFGGGKGGGVGIGGGKGGGVGGGVGGGAGGGIGGGA
GGGGGAGGGAGGGIGGGGGKGGGFGGGAGGGAGGGIGGGKGGGVGGGVGGGSGGGIGGGKGGGFGGGVGGGSGGGIGGGAGGGGGAGGGAGGGAGGGGGI
GGGKGGGVGGGVGGGSGGGIGGGAGGGGGVGVGAGGGAGGGGGIGGGKGGGVGGGVGGGSGGGFGGGAGGGGGVGGGAGGGIGGGAGGGKGGGAGGGFGG
GAGGGAGGGFGGGGGFGGGSGGGH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.008G104900
[exp]
0 1
AT4G02290 ATGH9B13 glycosyl hydrolase 9B13 (.1) Potri.014G126900
[exp]
2.00 0.9863 Pt-PCEL20.2
AT3G24480 Leucine-rich repeat (LRR) fami... Potri.006G245600
[exp]
5.47 0.9812
AT1G69530 ATHEXPALPHA1.2,... EXPANSIN 1, expansin A1 (.1.2.... Potri.004G123200
[exp]
8.83 0.9824 Pt-EXP2.4
AT5G18020 SAUR-like auxin-responsive pro... Potri.009G126400
[exp]
10.00 0.9817
AT1G68560 AXY3, TRG1, XYL... thermoinhibition resistant ger... Potri.008G120000
[exp]
11.57 0.9443 XYL1.2
AT1G29670 GDSL-like Lipase/Acylhydrolase... Potri.019G008300
[exp]
12.40 0.9716
AT3G26040 HXXXD-type acyl-transferase fa... Potri.008G034100
[exp]
14.14 0.9717
AT1G29450 SAUR-like auxin-responsive pro... Potri.004G181500
[exp]
14.24 0.9798
AT5G18020 SAUR-like auxin-responsive pro... Potri.009G126500
[exp]
14.38 0.9775
AT1G55320 AAE18 acyl-activating enzyme 18 (.1.... Potri.001G006600
[exp]
14.42 0.9786

Potri.008G104900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.