Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PHYB.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18790 1840 / 0 OOP1, HY3, PHYB OUT OF PHASE 1, phytochrome B (.1) AT4G16250 1778 / 0 PHYD phytochrome D (.1) AT4G18130 1321 / 0 PHYE phytochrome E (.1) AT1G09570 1208 / 0 FHY2, HY8, FRE1, PHYA ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) AT5G35840 1180 / 0 PHYC phytochrome C (.1) AT5G10720 71 / 3e-12 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT5G35750 55 / 4e-07 AHK2 histidine kinase 2 (.1) AT2G40940 50 / 6e-06 ERS1 ethylene response sensor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G145900 [exp] 2130 / 0 AT2G18790 1820 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Potri.013G000300 [exp] 1216 / 0 AT1G09570 1806 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Potri.003G032300 [exp] 75 / 3e-13 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.010G102900 [exp] 73 / 1e-12 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.001G204200 [exp] 72 / 1e-12 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.008G137900 [exp] 72 / 2e-12 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.002G201500 [exp] 71 / 3e-12 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.001G057400 [exp] 62 / 3e-09 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.018G011400 [exp] 61 / 4e-09 AT5G10720 707 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037771 [exp] 1990 / 0 AT2G18790 1848 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10016911 [exp] 1971 / 0 AT2G18790 1836 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10011967 [exp] 1390 / 0 AT4G18130 1444 / 0.0 phytochrome E (.1) Lus10006389 [exp] 1195 / 0 AT5G35840 1426 / 0.0 phytochrome C (.1) Lus10007594 [exp] 1190 / 0 AT1G09570 1852 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Lus10012151 [exp] 1178 / 0 AT1G09570 1855 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Lus10012342 [exp] 1122 / 0 AT5G35840 1363 / 0.0 phytochrome C (.1) Lus10004593 [exp] 471 / 9e-156 AT4G18130 462 / 2e-153 phytochrome E (.1) Lus10006388 [exp] 362 / 3e-114 AT5G35840 493 / 8e-165 phytochrome C (.1) Lus10004592 [exp] 300 / 4e-92 AT4G18130 321 / 1e-100 phytochrome E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [poplar] [flax] GAF PF00360 [poplar] [flax] PHY Phytochrome region CL0025 [poplar] [flax] His_Kinase_A PF00512 [poplar] [flax] HisKA His Kinase A (phospho-acceptor) domain CL0183 [poplar] [flax] PAS_Fold PF00989 [poplar] [flax] PAS PAS fold CL0161 [poplar] [flax] GAF PF01590 [poplar] [flax] GAF GAF domain CL0025 [poplar] [flax] His_Kinase_A PF02518 [poplar] [flax] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0183 [poplar] [flax] PAS_Fold PF08446 [poplar] [flax] PAS_2 PAS fold
Representative CDS sequence Show only first row Show all	>Potri.008G105200.5 pacid=42805886 polypeptide=Potri.008G105200.5.p locus=Potri.008G105200 ID=Potri.008G105200.5.v4.1 annot-version=v4.1 ATGGCATCACAATCACAAAGACAAAGCAACCAGCGGCAGCACCAGAATCAAGCGGCGCAGTCTTCTGGTACCAGTAACATGAGGCAACATCATCACGCCA CAGAATCAGTAAGCAAAGCAATTGCACAATACACTGTCGATGCACAACTCCATGCAGTTTTTGAACAATCTGGCGGGTCTGGTAAGTCGTTTGATTATTC ACAGTCAGTTAGAACTACTAGTCAGTCAGTACCCGAGGAACAAATCACTGCTTATTTATCAAAAATCCAAAGGGGTGGTCATATCCAGCCATTTGGGTGC ATGATTGCTGTAGATGAAGGGTCGTTTAGGGTCATTGCATATAGCGAAAATGCCAAAGAAATGCTTGGTTTAACTCCACAGTCAGTCCCTTCTCTAGATA AACAGGAAATTCTCTCTGATGGGACTGATGTAAGGACTCTTTTTAGGCCTTCGAGCTCCGCTATGCTTGAAAAAGCATTTGGTGCAAGGGAAATAACTTT GTTGAATCCAATTTGGATCCATTCCAAGAATTCCGGGAAGCCTTTTTACGCAATTTTGCATAGGATTGATGTTGGTATTGTTATTGATTTAGAGCCTGCT AGGACTGAAGACCCTGCTTTATCCATAGCAGGGGCTGTACAGTCTCAGAAATTAGCAGTTCGTTCGATTTCACAATTACAATCACTTCCTGGTGGGGATA TTAAGTTATTGTGTGATACTGTAGTGGAGAGTGTCAGAGAGCTTACCGGGTATGATAGAGTTATGGTTTATAAGTTTCATGAAGATGAGCATGGTGAGGT TGTGGCTGAGAATAAAAGGGCTGATTTGGAACCTTATATTGGTTTGCATTATCCTTCTACGGATATACCACAAGCTTCAAGGTTTTTGTTCAAGCAGAAT AGGGTTAGGATGATTGTGGATTGCCATGCTACACCTGTCCGTGTTATCCAGGATGAGGCGCTTATGCAGCCTTTATGCTTGGTTGGTTCAACTCTTCGAG CTCCTCATGGTTGTCATGCTCAGTATATGGCGAATATGGGGTCAATTGCTTCATTGGCCATGGCTGTTATTATTAATGGAAATGAGGAAGAAGCTATTGG TGGGAGGAATTCAACGAGGCTTTGGGGTTTGGTTGTTTGCCATCACACTTCTGCTAGGTGTATTCCATTTCCGCTTCGTTATGCATGTGAGTTTTTAATG CAGGCTTTTGGACTTCAATTGAACATGGAATTGCAGTTAGCGTCACAGTTGTCAGAGAAACATGTCTTGAGGACTCAGACTCTCTTGTGTGATATGCTTC TCCGTGACTCTCCTACTGGCATTGTCACTCAAAGTCCCAGTATCATGGATCTTGTGAAGTGTGACGGGGCAGCTCTTTATTACCAAGGACAGTATTATCC ATTGGGCGTGACCCCAACCGAAGCCCAAATAAAAGATATTGTGGAGTGGTTGTTGGCCCTTCACGGAGACTCAACTGGTTTAAGCACAGACAGTTTAGCT GATGCTGGGTATCCTGGGGCAGCCTCACTTGGCAATGCAGTTTGTGGAATGGCTGTTGCTTATATTACTAAGAGAGATTTTCTTTTCTGGTTTCGGTCTC ACACTGCAAAGGAGATCAAATGGGGTGGTGCGAAGCATCACCCAGAGGACAAGGATGATGGGCAGAGGATGCATCCACGTTCTTCATTCAAGGCATTTTT GGAGGTGGTGAAGAGCCGGAGTTTACTGTGGGAGAATGCAGAAATGGATGCCATTCATTCTTTGCAGCTTATTTTGCGAGACTCATTTAGGGACGTTGAA GCAACCAATTCTAAGGCAGTTGTACATGCCCAGCTCGAGGATACAGAATTGCAAGGGATGGATGAGCTCAGTTCGGTCGCAAGAGAAATGGTGAGACTAA TAGAGACTGCAACTGCTCCGATATTTGCTGTAGATGTTGATGGCTGCATAAATGGGTGGAATGCAAAGGTCGCTGAGTTGACTGGGCTCTCAGTTGACAA GGCCATGGGGAAGTCTTTGGTTCACGATCTTGTTTATAAGGAATATGAAGAAACAGTTGACAAACTCCTTCATCGTGCTTTAAGAGGTGAGGAGGATAAG AACGTGGAGATAAAATTGAGGACATTTGGCTCTGAACACCAAAAAAAGGCCCTTTTTGTGGTGGTAAATGCTTGTTCTAGCAAGGATTACATGAATAATA TAGTTGGAGTCTGCTTTGTCGGTCAGGATGTTACAGGTCAAAAGGTGGTAATGGACAAATATGTCCATATACAAGGTGATTATAAGGCTATTGTACACAG CCCCAATCCTTTGATCCCTCCTATATTTGCTTCAGATGAAAACACATGTTGCTTGGAGTGGAACACTGCCATGGAAAAATTCACGGGGTGGTCCCGGGGG GAAGTTATTGGGAAGATGTTGGTTGGGGAGGTTTTTGGCAGTTGCTGTCAGCTCAAGGGTTCAGATGCACTGACAAAATTCATGATTGCTCTGCACAATG CAATTGGAGGGCAAGATACAGACAAGCTACCATTTTCATTTTTTGACCGGAATGGAAAGTATGTGCAAGCTCTCTTGACAGCGAACAAGAGGGTAAATAT GGAGGGAGAGATTGTTGGAGCCTTCTGCTTCTTGCAGATTGCAAGTAATGAGTTGCAGCAAGCTTTGAAAGTCCAGAGACAGCAGGAAAAGAAGTGCTCT GCAAGGATGAAAGAGTTGGCTTACATCTGCCAGGAAATAAGGAATCCTTTAAGCGGTCTACGCTTTACCAACTCGCTTTTGGAGAACACGGACTTGACTG AAGATCAAAAGCAGTTTCTTGAGACTAGTGCTGCTTGTGAAAAGCAGATATTGAAGATCACTCGAGATGTTGATCTTGAGAGCATCGAAAATGGTTTACT GGAGCTTGAGAAGGCTGAATTCTTATTCGGGAGTGTCATAAATGCTGTTGTTAGCCAAGCAATGCTATTGCTGAGGGAAAGAAATCTGCAATTGCTTCGT GATATTCCAGAAGAAATAAAAACGCTGGTGGTTTATGGTGATCAGGCAAGAATTCAACAAGTACTGGCTGATTTCTTGTTGAATATGGTGCGTTATGCTC CATCTTCAGCAGGTTGGGTAGAGATTCATGTTTGTCCAACACTGAAGCAAATCTCTGATGGACACACTCTCGTGCATATGGAGTTCAAGATTGTTTGCCC TGGTGAAGGTCTTCCTCCTGAATTAGTTCAAGACATGTTCCATAGTAGTAGATGGGTTACTCAAGAGGGCCTAGGGCTCAGCATGTGCAGGAAGATTTTA AAGCTAATGAATGGTGAGGTCCAATATATTAGAGAGTCAGAAAGATGCTATTTCTTAGTTATCCTCGAAGTACCCATGCCTAATAGTGTGAGAGGTATAA CTGTAAAAAGTGCTGCAGACTAG
AA sequence Show only first row Show all	>Potri.008G105200.5 pacid=42805886 polypeptide=Potri.008G105200.5.p locus=Potri.008G105200 ID=Potri.008G105200.5.v4.1 annot-version=v4.1 MASQSQRQSNQRQHQNQAAQSSGTSNMRQHHHATESVSKAIAQYTVDAQLHAVFEQSGGSGKSFDYSQSVRTTSQSVPEEQITAYLSKIQRGGHIQPFGC MIAVDEGSFRVIAYSENAKEMLGLTPQSVPSLDKQEILSDGTDVRTLFRPSSSAMLEKAFGAREITLLNPIWIHSKNSGKPFYAILHRIDVGIVIDLEPA RTEDPALSIAGAVQSQKLAVRSISQLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAENKRADLEPYIGLHYPSTDIPQASRFLFKQN RVRMIVDCHATPVRVIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNEEEAIGGRNSTRLWGLVVCHHTSARCIPFPLRYACEFLM QAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKDIVEWLLALHGDSTGLSTDSLA DAGYPGAASLGNAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLLWENAEMDAIHSLQLILRDSFRDVE ATNSKAVVHAQLEDTELQGMDELSSVAREMVRLIETATAPIFAVDVDGCINGWNAKVAELTGLSVDKAMGKSLVHDLVYKEYEETVDKLLHRALRGEEDK NVEIKLRTFGSEHQKKALFVVVNACSSKDYMNNIVGVCFVGQDVTGQKVVMDKYVHIQGDYKAIVHSPNPLIPPIFASDENTCCLEWNTAMEKFTGWSRG EVIGKMLVGEVFGSCCQLKGSDALTKFMIALHNAIGGQDTDKLPFSFFDRNGKYVQALLTANKRVNMEGEIVGAFCFLQIASNELQQALKVQRQQEKKCS ARMKELAYICQEIRNPLSGLRFTNSLLENTDLTEDQKQFLETSAACEKQILKITRDVDLESIENGLLELEKAEFLFGSVINAVVSQAMLLLRERNLQLLR DIPEEIKTLVVYGDQARIQQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHMEFKIVCPGEGLPPELVQDMFHSSRWVTQEGLGLSMCRKIL KLMNGEVQYIRESERCYFLVILEVPMPNSVRGITVKSAAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.008G105200 [exp]	0	1	Pt-PHYB.1
AT5G53060			RNA-binding KH domain-containi...		Potri.002G112200 [exp]	2.23	0.8481
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G154300 [exp]	2.44	0.8904
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Potri.006G248100 [exp]	4.47	0.8598	LUG.1
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.007G107800 [exp]	7.14	0.8534
AT3G21470			Pentatricopeptide repeat (PPR-...		Potri.002G072500 [exp]	7.34	0.8326
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125050 [exp]	8.60	0.8022
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Potri.017G124500 [exp]	10.95	0.8480
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Potri.005G146400 [exp]	11.83	0.8156
AT3G52060			Core-2/I-branching beta-1,6-N-...		Potri.010G242900 [exp]	12.64	0.8217
					Potri.018G138206 [exp]	15.36	0.8518

Compare expression of checked genes

Potri.008G105200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.