Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24972 106 / 2e-29 TPD1 tapetum determinant 1 (.1) AT1G32583 104 / 1e-28 unknown protein AT4G32090 47 / 5e-07 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1) AT1G05835 44 / 7e-06 PHD finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G145501 [exp] 147 / 1e-46 AT1G32583 74 / 1e-17 unknown protein Potri.015G101000 [exp] 112 / 1e-31 AT1G32583 157 / 5e-49 unknown protein Potri.006G017600 [exp] 111 / 3e-31 AT1G32583 187 / 5e-61 unknown protein Potri.012G102900 [exp] 111 / 3e-31 AT1G32583 160 / 2e-50 unknown protein Potri.010G246900 [exp] 77 / 1e-18 AT1G32583 104 / 3e-29 unknown protein Potri.010G246300 [exp] 72 / 2e-16 AT1G32583 85 / 1e-21 unknown protein Potri.002G233000 [exp] 66 / 3e-14 AT1G05835 111 / 2e-32 PHD finger protein (.1) Potri.004G167900 [exp] 48 / 2e-07 AT4G32090 117 / 7e-35 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1) Potri.006G257600 [exp] 42 / 2e-05 AT4G32105 77 / 4e-19 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016744 [exp] 107 / 9e-30 AT4G24972 172 / 5e-55 tapetum determinant 1 (.1) Lus10001911 [exp] 105 / 2e-29 AT1G32583 157 / 5e-50 unknown protein Lus10022437 [exp] 107 / 1e-27 AT5G51140 505 / 1e-177 Pseudouridine synthase family protein (.1.2) Lus10026289 [exp] 74 / 6e-17 AT4G32090 72 / 5e-17 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1) Lus10042384 [exp] 66 / 5e-14 AT4G32110 81 / 1e-20 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1) Lus10012177 [exp] 48 / 1e-07 AT4G32090 66 / 6e-15 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1) Lus10007569 [exp] 48 / 1e-07 AT4G32110 64 / 2e-14 Beta-1,3-N-Acetylglucosaminyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G105600.1 pacid=42806378 polypeptide=Potri.008G105600.1.p locus=Potri.008G105600 ID=Potri.008G105600.1.v4.1 annot-version=v4.1 ATGAGCTCTTGTCATATTTGCCTCCTCTACTTGATGATGATGATGCTCATCATTACAGGTTGCAGTCTTGGAATAAAAACAGGTGGTTCAGATAAGTTTT TGCAATCATGTGATGGAAGTAATAACCAATCAACAACACTAACCACCATAAGACAACAGTCATACTCAAGCCACAGAAAGCTTTCGGTACATGGTACTTG CACAAACAGAGATATAAGCATCTCACAAAGTAGAGATACTACTTCTGGGATCCCACAGTACATAGTGCAGATTGTCAACACTTGCGTTTATGGTTGTGCT CCTTCAAATATCCATCTCCATTGTGGCTGGTTTGCCTCTGCAAGAATGGTTAACCCAAGAACCTTCAAAAGGCTCTCTTATGATGATTGCTTGGTAAATG GAGGGAAAGCTTTGAAGACTAGTCAGACTGTCAGATTCACATACTCAAACTCCTTCATGTACGCACTCCAATTCAAGTCTGCCAAGTTCTGCTGA
AA sequence Show only first row Show all	>Potri.008G105600.1 pacid=42806378 polypeptide=Potri.008G105600.1.p locus=Potri.008G105600 ID=Potri.008G105600.1.v4.1 annot-version=v4.1 MSSCHICLLYLMMMMLIITGCSLGIKTGGSDKFLQSCDGSNNQSTTLTTIRQQSYSSHRKLSVHGTCTNRDISISQSRDTTSGIPQYIVQIVNTCVYGCA PSNIHLHCGWFASARMVNPRTFKRLSYDDCLVNGGKALKTSQTVRFTYSNSFMYALQFKSAKFC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24972		TPD1	tapetum determinant 1 (.1)		Potri.008G105600 [exp]	0	1
AT1G15190			Fasciclin-like arabinogalactan...		Potri.019G002300 [exp]	9.38	0.6063
AT4G27330	NZZ	NZZ, SPL	NOZZLE, sporocyteless (SPL) (....		Potri.011G125600 [exp]	21.63	0.5465
					Potri.003G030066 [exp]	22.67	0.6335
AT3G57450			unknown protein		Potri.001G263404 [exp]	123.48	0.5240
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Potri.015G135900 [exp]	161.63	0.5152	LBD23.2

Compare expression of checked genes

Potri.008G105600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.