Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67620 184 / 2e-59 Lojap-related protein (.1) AT3G12930 55 / 3e-09 Lojap-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G142900 [exp] 54 / 7e-09 AT3G12930 321 / 6e-112 Lojap-related protein (.1) Potri.001G458600 [exp] 53 / 1e-08 AT3G12930 301 / 6e-104 Lojap-related protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015822 [exp] 223 / 7e-75 AT1G67620 168 / 2e-53 Lojap-related protein (.1) Lus10036979 [exp] 166 / 6e-53 AT1G67620 129 / 1e-38 Lojap-related protein (.1) Lus10002544 [exp] 54 / 6e-09 AT3G12930 284 / 2e-97 Lojap-related protein (.1) Lus10027381 [exp] 52 / 3e-08 AT3G12930 280 / 5e-96 Lojap-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [poplar] [flax] NTP_transf PF02410 [poplar] [flax] RsfS Ribosomal silencing factor during starvation
Representative CDS sequence Show only first row Show all	>Potri.008G105700.3 pacid=42806963 polypeptide=Potri.008G105700.3.p locus=Potri.008G105700 ID=Potri.008G105700.3.v4.1 annot-version=v4.1 ATGTTGGCTGCAACTCTGCGATCTCGGTCTCTTCATCTCTCATCTTCACTCCTGAATCATCCATGGAAACCTGTGTTGTCAGGTTCCGGTCATACTTTCT CTTCATCAGCTGTTGAATCCAACAGTGACAGAAGCATACTGGACCTAAACGAGATAGAGAAGGTTCTCACTGATGTGAGAGCAGATGACGTGAAAGTTAT ACCAGCTAAAAAGCACGCTGAATGGGCTGATTATATGGTCATTGCCACTGGCAGGTCCACATGGCATGTCAAAAACATTGCTCAAGCCCTTATTTACAAG GCTAAGCAAAAGCAAAAGGGGGCTCAGCGAATGACCCTCCCCAGTGTGGAAGGGCAAGAGGGAGGAAAGTGGATTGTTATTGACTCTGGCAAGGTGATAG TTCATGCTCTTGACGAGAAAGCTCGAGCGTACTACAATTTGGAAAGTCTTTGGACCTCAGATGCATCTAAAGAGGAACCAGATCAGGACTTGGATAAAGC TTTTATCAAGATTCGTCCCAAGAGAAACAATTCTAAAAGACCAGCAAATAGAGGTGCCTGA
AA sequence Show only first row Show all	>Potri.008G105700.3 pacid=42806963 polypeptide=Potri.008G105700.3.p locus=Potri.008G105700 ID=Potri.008G105700.3.v4.1 annot-version=v4.1 MLAATLRSRSLHLSSSLLNHPWKPVLSGSGHTFSSSAVESNSDRSILDLNEIEKVLTDVRADDVKVIPAKKHAEWADYMVIATGRSTWHVKNIAQALIYK AKQKQKGAQRMTLPSVEGQEGGKWIVIDSGKVIVHALDEKARAYYNLESLWTSDASKEEPDQDLDKAFIKIRPKRNNSKRPANRGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67620			Lojap-related protein (.1)		Potri.008G105700 [exp]	0	1
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.011G063300 [exp]	1.73	0.8139
AT5G10460			Haloacid dehalogenase-like hyd...		Potri.019G099100 [exp]	7.48	0.7541
AT4G38020			tRNA/rRNA methyltransferase (S...		Potri.005G147600 [exp]	12.96	0.7454
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Potri.015G057400 [exp]	28.98	0.7533
AT3G54640		TRP3, TSA1	TRYPTOPHAN-REQUIRING 3, trypto...		Potri.005G217700 [exp]	29.56	0.6956	TSA1.1
AT5G03220			Mediator complex, subunit Med7...		Potri.016G062800 [exp]	32.68	0.7514
AT1G51730			Ubiquitin-conjugating enzyme f...		Potri.001G193700 [exp]	33.46	0.7023
AT1G65290		MTACP2	mitochondrial acyl carrier pro...		Potri.019G055300 [exp]	35.74	0.7388
AT5G63000			Mitochondrial import inner mem...		Potri.015G078600 [exp]	37.22	0.6608
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Potri.002G149500 [exp]	38.49	0.7094	Pt-DHDPS2.1

Compare expression of checked genes

Potri.008G105700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.