Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ALDH22.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G66658 1049 / 0 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G74920 222 / 3e-65 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48170 219 / 2e-64 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G79440 213 / 6e-62 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT1G23800 206 / 6e-59 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48000 193 / 2e-54 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G24503 192 / 2e-54 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT1G44170 170 / 3e-46 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) AT4G36250 167 / 2e-45 ALDH3F1 aldehyde dehydrogenase 3F1 (.1) AT2G24270 163 / 7e-44 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G075600 [exp] 226 / 6e-67 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 216 / 1e-62 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.015G070600 [exp] 212 / 1e-61 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.002G189900 [exp] 204 / 2e-58 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.012G078700 [exp] 202 / 1e-57 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.015G074100 [exp] 198 / 5e-56 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.018G075000 [exp] 191 / 5e-54 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.007G017100 [exp] 186 / 2e-52 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.005G069800 [exp] 176 / 7e-48 AT4G34240 626 / 0.0 aldehyde dehydrogenase 3I1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016901 [exp] 1037 / 0 AT3G66658 1021 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Lus10037763 [exp] 1028 / 0 AT3G66658 1008 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Lus10034115 [exp] 222 / 1e-64 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10042149 [exp] 209 / 2e-60 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10029166 [exp] 209 / 5e-60 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10012999 [exp] 206 / 4e-59 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10043470 [exp] 202 / 6e-58 AT1G74920 818 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10023625 [exp] 195 / 3e-55 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10001845 [exp] 189 / 4e-53 AT1G79440 741 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Lus10024259 [exp] 189 / 5e-53 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [poplar] [flax] ALDH-like PF00171 [poplar] [flax] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Potri.008G106000.1 pacid=42807441 polypeptide=Potri.008G106000.1.p locus=Potri.008G106000 ID=Potri.008G106000.1.v4.1 annot-version=v4.1 ATGGCGTTTTGGTGGCCATTGATAGTTGCTGCATCCGCGTACGCGATCTGTCGTTTCTTGTTAATGCTCATTCCTTTCAATGTGCCTTCAATCGACGTCG ATGCCTCTGACGTCACGGAGGGCAATCAAACGCAAGAGAACAGCTTCATCTATATTCCTCCGAGAGGAAGGGCACAGCAGTCGGATAAAAAGGTTCAGTG TTATGAGCCCGCGACGATGAAATACTTGGGATTCTTCCCTGCATTGTCGCCTGCTGAGGTCCATGACCGAGTGGCACAGGCGAGGAAGGCTCAGAAAATA TGGGCAGAAAGCAGCTTCAAGCAAAGACGACAGTTTCTGCGGATTCTTCTCAAGTACATTATTGAACATCAAGAGCTTATATGCGAAGTATCTTCACGTG ATACTGGAAAGACAATGGTAGATGCTTCTTTAGGAGAAATAATGACAACATGTGAGAAGATCACTTGGCTTCTTTCAGAGGGTGAGAAGTGGCTAAAGCC TGAATACCGATGTTCTGGGAGAGCAATGTTTTACAAAAAATCTAGGGTTGAGTTTCACCCTCTTGGTGTTATCGGTGCCATAGTTTCATGGAACTATCCC TTCCATAATATCTTCAATCCAATGCTGGCGGCAGTCTTTTCAGGGAATAGCATTGTGATCAAGGTTTCAGAAAATGCAAGCTGGTCTGGATTGTTCTATT TCAGAATAATCCAAGCAGCTCTTGCTGCTGTGGGAGCTCCTGAAAATCTGGTTGACGTAATCACAGGGTTTGCTGAAACAGGAGAAGCACTAGTGTCATC AGTTGATAAAATCATATTTGTTGGATCACCTGGTGTGGGTAAGATGATAATGAGAAATGCTTCTGACACACTTATACCGGTAACACTTGAGCTTGGTGGA AAAGATCCATTTATTGTGTGTGAAGATGCAGATGTCTCTCATGTTGCACAAATTGCTGTCAGGGCTGTTCTTCAATCAAGTGGGCAGAATTGTGCTGGGG CTGAGAGGTTCTATGTTCATAGGGACATCTATTCTTCATTTGTCAGTGAAGTAACTAAAATTGTTAAATCTGTTTCAGTTGGACCACCCCTTGCTGGTAG GTATGATATGGGGGCAATATGCTTGCAAGAGCATTCTGATAAGCTCCAAATCCTCGTAAATGATGCCTTAGAGAAAGGAGCAGAAATTGTTGTTCGCGGA AGTTTTGGCCATCTGGGTGAAGGTGCAGTTGATCAGTTCTACCCTCCCACCGTGCTTGTAAATGTTGACCACACAATGAAACTGATGCAAGAAGAGACTT TTGGACCAATTATGCCGATAATGAAATTTAGTACTGATGAAGAGGCTGTCAAACTTGCAAATGACTCAAGATATGGGCTTGGCTGCGCTGTTTTTTCGGG TAGTCAGCGCCGAGCTAGAGAGATTGCTTCTCAGATACATTGTGGAGTTGCTGCAGTTAATGACTTTGCATCAAATTACATGTGTCAGTCCCTGCCATTT GGTGGTGTGAAGCACAGTGGATTTGGCAGATTTGCTGGTGTGGAAGGATTGCGGGCTTGCTGTCTTGTGAAATCAGTTGTGGAAGATAGGTTGTGGCCAT ACATTAAAACCAAGATACCAAAGCCTATCCAGTATCCTGTTGGGGAGAACAGCTTTGAGTTCCAGCAGTCTCTTGTAGAAGCACTCTATGGCTTGAACAT ACGGGATAAGCTGCGAGCGGGGGTCAATGTTTTGAAGATCATGTCAGAACAAAACTCCAGCAACAGTAAGAGTAGAAATGAGTAA
AA sequence Show only first row Show all	>Potri.008G106000.1 pacid=42807441 polypeptide=Potri.008G106000.1.p locus=Potri.008G106000 ID=Potri.008G106000.1.v4.1 annot-version=v4.1 MAFWWPLIVAASAYAICRFLLMLIPFNVPSIDVDASDVTEGNQTQENSFIYIPPRGRAQQSDKKVQCYEPATMKYLGFFPALSPAEVHDRVAQARKAQKI WAESSFKQRRQFLRILLKYIIEHQELICEVSSRDTGKTMVDASLGEIMTTCEKITWLLSEGEKWLKPEYRCSGRAMFYKKSRVEFHPLGVIGAIVSWNYP FHNIFNPMLAAVFSGNSIVIKVSENASWSGLFYFRIIQAALAAVGAPENLVDVITGFAETGEALVSSVDKIIFVGSPGVGKMIMRNASDTLIPVTLELGG KDPFIVCEDADVSHVAQIAVRAVLQSSGQNCAGAERFYVHRDIYSSFVSEVTKIVKSVSVGPPLAGRYDMGAICLQEHSDKLQILVNDALEKGAEIVVRG SFGHLGEGAVDQFYPPTVLVNVDHTMKLMQEETFGPIMPIMKFSTDEEAVKLANDSRYGLGCAVFSGSQRRAREIASQIHCGVAAVNDFASNYMCQSLPF GGVKHSGFGRFAGVEGLRACCLVKSVVEDRLWPYIKTKIPKPIQYPVGENSFEFQQSLVEALYGLNIRDKLRAGVNVLKIMSEQNSSNSKSRNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Potri.008G106000 [exp]	0	1	ALDH22.1
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Potri.019G037600 [exp]	1.00	0.9434
AT1G69420			DHHC-type zinc finger family p...		Potri.008G091700 [exp]	2.00	0.9386
AT4G19350		EMB3006	embryo defective 3006 (.1)		Potri.004G235300 [exp]	2.23	0.9286
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.014G073800 [exp]	2.44	0.9379
AT2G25220			Protein kinase superfamily pro...		Potri.018G022300 [exp]	3.31	0.9108
AT5G11800		ATKEA6, KEA6	K+ efflux antiporter 6, ARABID...		Potri.018G054100 [exp]	3.46	0.9199	ATKEA4.2
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Potri.016G093600 [exp]	3.74	0.9184	PGP1.2
AT2G38840			Guanylate-binding family prote...		Potri.005G217300 [exp]	4.89	0.9091
AT1G53320	TUB	AtTLP7	tubby like protein 7 (.1)		Potri.011G109300 [exp]	6.16	0.8984
AT5G15080			Protein kinase superfamily pro...		Potri.004G129000 [exp]	6.32	0.9125

Compare expression of checked genes

Potri.008G106000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.