Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06660 204 / 3e-61 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1) AT1G56460 176 / 6e-50 HIT zinc finger ;PAPA-1-like conserved region (.1.2) AT2G47350 154 / 1e-41 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G014000 [exp] 248 / 1e-76 AT1G56460 250 / 1e-76 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.013G008300 [exp] 247 / 7e-76 AT2G47350 268 / 3e-83 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.010G144000 [exp] 217 / 1e-69 ND / Potri.014G119600 [exp] 218 / 7e-65 AT2G47350 272 / 1e-84 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.002G195132 [exp] 202 / 1e-61 AT1G56460 236 / 5e-74 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037760 [exp] 251 / 4e-79 AT1G56460 209 / 9e-63 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Lus10016899 [exp] 243 / 2e-75 AT3G06660 214 / 1e-64 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1) Lus10031419 [exp] 219 / 9e-66 AT1G56460 349 / 9e-115 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Lus10010914 [exp] 215 / 3e-64 AT1G56460 356 / 3e-117 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF04438 [poplar] [flax] zf-HIT HIT zinc finger CL0175 [poplar] [flax] PF04795 [poplar] [flax] PAPA-1 PAPA-1-like conserved region
Representative CDS sequence Show only first row Show all	>Potri.008G106200.1 pacid=42806666 polypeptide=Potri.008G106200.1.p locus=Potri.008G106200 ID=Potri.008G106200.1.v4.1 annot-version=v4.1 ATGGAAAATTTAAATGGGACTCATTCCGCTGGTCTTGGGTCCACAATAAGGAAGAAGAGGAGTATTATATCTCGTCGGCCTTGTTCTGATCCACAGAAAT TTCTACAGACTTCTACTTTGCTGTCATCCTCTACGCAGTTTTTAAACTGTGGACACAATGAGGAACAAGTAGCATCTGGTTCAGATGGATTGAGAAGTGA GAAAAGACTGAAGAAGCTTAAGCTCAAGTTTGGTGGTGTCACTCATACAATACATGCCAAGCCAGCAACAGAATATGCTTTCAATGGCGGGTCTTCACTC ACAAAATCTTATCAAGGTTTTGATGCTTCTCGGTCTCGAGAGAAGTTACTTGTTCAGGATTCTAGTTTTAGAAAGGGCAATTCTTCGGGAAGAAAGATGT CTGGTGAAAGTATCTTTGTGAACGGAACATCCCATTTTGAAGCAGTTCGCAAGAGTAACAGAGTTCCTAAGAGGTGTGCAATGGATGTGGAATTTGATGA AGATGGTGACATAGATGAGGAAGTACGTTACCTTGGAAGACTCAATGCTTATAAGGAGAGAAGAAGGGGGGTATCAATGGTTTCAGATGGTAGGCAAGAG GATAAGGATTTTGTGCAAGAGGAAGAGCCTACATCAGAGGATGAACCTGGATACCCAAGCAAGAGGCTGGGATATGTTGGAGGAAGGAATGAATCAACTA CAACTGCACATAAACGGGCTCGTCAGACAGCCAAAGATGATTTTCTTGTGCCTGGTGCCAGTCTTCTTGAGTTCCCGAATGGTTTACCTTCAATCCCTCC TAAAAAACAAAAGACTAAGCTCTCCGAAGTAGAGCAGCAATTAAAGAAAGCTGAGACTGCACAAAGGCGTAGAATGCAATCAGAGAAGGCAGCAAGGGAG GCTGAGGCTGAAGCAATCAGAAAAATACGTGGCCAGGATTCTGGAAGAAAGAAGAAGGAAGAAAAGATGAGGAAACAGCGTGATGAAGTGGTTCAGGCAA AGGCTGCCAAAGCTGATGCAATTGGGCCAAATACTGTCAGATGGGTCATTGGCCCCACTGGAACTACGGTTATTTTCTCTGACGACATTGGTCTGCCACG CATATTTAATTCAGTGCCATGCAGTTATCCTCCACCACGTGAAAAATGTGCGGGTCCAAACTGTACAAATGCATACAAGTATCGCGACTCGAAGTCAAAG CTTCCCCTGTGTAGTCTCCATTGTTACAAGGCAATACATGGAAAGATGCAACCTTTAATTACCTGCTGA
AA sequence Show only first row Show all	>Potri.008G106200.1 pacid=42806666 polypeptide=Potri.008G106200.1.p locus=Potri.008G106200 ID=Potri.008G106200.1.v4.1 annot-version=v4.1 MENLNGTHSAGLGSTIRKKRSIISRRPCSDPQKFLQTSTLLSSSTQFLNCGHNEEQVASGSDGLRSEKRLKKLKLKFGGVTHTIHAKPATEYAFNGGSSL TKSYQGFDASRSREKLLVQDSSFRKGNSSGRKMSGESIFVNGTSHFEAVRKSNRVPKRCAMDVEFDEDGDIDEEVRYLGRLNAYKERRRGVSMVSDGRQE DKDFVQEEEPTSEDEPGYPSKRLGYVGGRNESTTTAHKRARQTAKDDFLVPGASLLEFPNGLPSIPPKKQKTKLSEVEQQLKKAETAQRRRMQSEKAARE AEAEAIRKIRGQDSGRKKKEEKMRKQRDEVVQAKAAKADAIGPNTVRWVIGPTGTTVIFSDDIGLPRIFNSVPCSYPPPREKCAGPNCTNAYKYRDSKSK LPLCSLHCYKAIHGKMQPLITC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06660			PAPA-1-like family protein / z...		Potri.008G106200 [exp]	0	1
AT5G11760			unknown protein		Potri.018G056000 [exp]	6.48	0.6716
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.018G008400 [exp]	9.48	0.6142
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Potri.001G069100 [exp]	10.29	0.6781	Pt-ARS27.2
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.013G086400 [exp]	14.28	0.6710
AT5G58930			Protein of unknown function (D...		Potri.001G248400 [exp]	15.49	0.6411
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Potri.015G004600 [exp]	15.81	0.6454
AT5G49210			unknown protein		Potri.001G317300 [exp]	15.81	0.6311
AT3G12680	C3HZnF	HUA1	ENHANCER OF AG-4 1, floral hom...		Potri.008G080300 [exp]	16.52	0.6384	Pt-HUA1.1
AT5G57100			Nucleotide/sugar transporter f...		Potri.018G139500 [exp]	24.37	0.6305
AT2G18400			ribosomal protein L6 family pr...		Potri.007G024900 [exp]	24.81	0.6576

Compare expression of checked genes

Potri.008G106200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.