Plant FIBer expression Database

Pt-PIOX.1 (Potri.008G106400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-PIOX.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G01420 925 / 0 PADOX-1, ALPHA-DOX1, DIOX1 plant alpha dioxygenase 1, alpha-dioxygenase 1, Peroxidase superfamily protein (.1)
AT1G73680 769 / 0 ALPHADOX2 ,ALPHA DOX2 alpha dioxygenase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G049500
[exp]
821 / 0 AT1G73680 1007 / 0.0 alpha dioxygenase (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039436
[exp]
864 / 0 AT3G01420 905 / 0.0 plant alpha dioxygenase 1, alpha-dioxygenase 1, Peroxidase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0617 Peroxidase PF03098 An_peroxidase Animal haem peroxidase
Representative CDS sequence
>Potri.008G106400.1 pacid=42805824 polypeptide=Potri.008G106400.1.p locus=Potri.008G106400 ID=Potri.008G106400.1.v4.1 annot-version=v4.1
ATGATTCGGCTAACAGAGCTGATAAAAAAATTATCAAGTGCATCTCTCCGTCGTTTCATCCACCAAGACTTCCATGAAGTTGTTGATAGGATGACCATTA
TTGATGCTTTTCTTTTCCTGATTGTGCACTCCATTGATAAGCTGGGGATATGGCATCGGTTGCCTGTATTCTTAGGCCTGCTTTATTTGTCTGTACGGAG
GCACCTTCACCAGGAGTACAGCTTGTTCAATGTTGGGAGATCCCCTACCGGAGTTCGCTATAACCCAGCAGATTATCCGTATAGAACAGCCGATGGAAAA
TATAACGAGCCCTTCAACGAGGGTGCAGGAAGCCAAGGAACTTTCTTTGGAAGAAACGTTCTCCCAGTAAATCAACAAGATAAGCTAAAGAAGCCAGACC
CTATGGTCGTTGCCACAAGACTACTAGCTCGGAAAAAATTTATAGACACAGGAAAGCAATTCAACATGATAGCAGCTTCATGGATTCAGTTTATGATACA
TGACTGGGTTGATCACATGGAAGAAACTGCGCAGATTGAGCTTGTTGCACCAAAGGAAGTTGCAAATCAATGCCCACTTAAATCTTTCAGGTTTTACAAG
ACGAAGGAAGTCCCCACTGGATTCTGGGATATCAAGAGTGGAGCGTTGAATATTCGTACACCTTGGTGGGATGGAAGTGCTATATACGGGAGCAATGAAA
AAAGGCTGCATAAGGTTAGAACTTTCAAAGATGGGAAGCTCAAGATATCTGAAGACGGCCTTCTCCTTCATGACCAAGATGGGATTGCTGTTTCAGGAGA
TGTTCGCAATAGTTGGGCAGGTGTTTCCATTTTGCAAGCCCTCTTCGTTAAAGAGCATAACGCAGTTTGTGACACCCTCAAGAGGGAATATAAGGACTTG
GGAGACGAAGAGCTATACCGGCATGCAAGGCTAGTGACTTCTGCAGTAATTGCAAAAGTTCATACAATTGATTGGACTGTTGAACTTCTCAAAACTGATA
CACTATTAGCAGGGATGCGAGGCAATTGGTATGGGTTGTTGGGGAAAAACTTCAAGGACAAGTTTGGTCATGTTGGAGGAGCTATCTTGGGAGGTGTTGT
GGGGCTTAAGAAGCCTGAAAACCATGGTGTCCCATATTCATTAACTGAGGAGTTTGTCTCTGTTTACAGAATGCACTCACTTCTCCCTGATTACCTTCAG
CTTAGAGACATATCAGCTGCACCGGACTCTCACAAATCTCCGCCTTCAACTGACAAGATACCTATGCCAAGTTTGATAGGTCGTGGAGGAGAAAAAACAT
TATCTGGAATTGGATTTATCAAACTAATGGTTTCAATGGGCCACCAAGCTTCTGGGGCATTGGAACCATGGAATTATCCCATGTGGCTCAGGGACGTCGT
AGCACAGGATGTTGATGGTATGGACCGGCCTGATCATGTAGACCTTGCCGCTCTTGAAGTTTACCGGGACAGGGAGAGGAATGTTGCGAGGTACAATGAG
TTTCGTAGGGCTCTACTACTGATACCCATCTCAAAATGGGAAGATGTAACGGATGATCAGGAGGTGATAGAAGCTCTTTATGAAGTCTATGGTGATGAAG
TGGAAGAGCTCGATCTTCTAGTGGGACTTATGGCAGAGAAGAAAATTAAAGGATTTGCAATTAGCGAGACTGCTTTTATTATATTCCTTATCATGGCAAC
CAGGAGGTTAGAGGCAGATAGGTTCTTCACAAGCAATTTCAACGAGGAAACATACACGAAGAAAGGATTTGAATGGGTGAATTCAACAGAGAGTCTGAAA
GATGTCCTTGATCGTCATTATCCAGAAATGACTGCAAAATGGATGAACTCAGCAAGTGCTTTCTCTGTTTGGGACTCGCCTCCACCTTCTCCCAATCCCA
TTCCTCTTCTTTTTCGAGTTCCGAAGTGA
AA sequence
>Potri.008G106400.1 pacid=42805824 polypeptide=Potri.008G106400.1.p locus=Potri.008G106400 ID=Potri.008G106400.1.v4.1 annot-version=v4.1
MIRLTELIKKLSSASLRRFIHQDFHEVVDRMTIIDAFLFLIVHSIDKLGIWHRLPVFLGLLYLSVRRHLHQEYSLFNVGRSPTGVRYNPADYPYRTADGK
YNEPFNEGAGSQGTFFGRNVLPVNQQDKLKKPDPMVVATRLLARKKFIDTGKQFNMIAASWIQFMIHDWVDHMEETAQIELVAPKEVANQCPLKSFRFYK
TKEVPTGFWDIKSGALNIRTPWWDGSAIYGSNEKRLHKVRTFKDGKLKISEDGLLLHDQDGIAVSGDVRNSWAGVSILQALFVKEHNAVCDTLKREYKDL
GDEELYRHARLVTSAVIAKVHTIDWTVELLKTDTLLAGMRGNWYGLLGKNFKDKFGHVGGAILGGVVGLKKPENHGVPYSLTEEFVSVYRMHSLLPDYLQ
LRDISAAPDSHKSPPSTDKIPMPSLIGRGGEKTLSGIGFIKLMVSMGHQASGALEPWNYPMWLRDVVAQDVDGMDRPDHVDLAALEVYRDRERNVARYNE
FRRALLLIPISKWEDVTDDQEVIEALYEVYGDEVEELDLLVGLMAEKKIKGFAISETAFIIFLIMATRRLEADRFFTSNFNEETYTKKGFEWVNSTESLK
DVLDRHYPEMTAKWMNSASAFSVWDSPPPSPNPIPLLFRVPK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G01420 PADOX-1, ALPHA-... plant alpha dioxygenase 1, alp... Potri.008G106400
[exp]
0 1 Pt-PIOX.1
AT1G14550 Peroxidase superfamily protein... Potri.010G236850
[exp]
2.82 0.8221
AT3G59880 unknown protein Potri.017G002100
[exp]
5.47 0.8182
AT1G64405 unknown protein Potri.001G091500
[exp]
8.00 0.7790
AT1G14550 Peroxidase superfamily protein... Potri.010G236910
[exp]
13.52 0.8151
AT5G37490 ARM repeat superfamily protein... Potri.010G103100
[exp]
17.17 0.8070
AT2G39110 Protein kinase superfamily pro... Potri.010G225300
[exp]
17.43 0.7538
AT5G13330 AP2_ERF RAP2.6L related to AP2 6l (.1) Potri.003G162500
[exp]
23.91 0.8081
AT1G66200 ATGSR2, GLN1;2 glutamine synthetase 1;2, glut... Potri.005G093200
[exp]
24.49 0.7911 NCPGS.4
AT4G38540 FAD/NAD(P)-binding oxidoreduct... Potri.019G003600
[exp]
28.14 0.8038
AT4G00430 PIP1;4, TMP-C, ... TRANSMEMBRANE PROTEIN C, PLASM... Potri.008G065600
[exp]
30.74 0.7183 MDPIP1.3

Potri.008G106400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.