Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29760 423 / 9e-140 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 413 / 4e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 400 / 1e-131 SLO1 SLOW GROWTH 1 (.1) AT4G18840 395 / 2e-131 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G48910 384 / 2e-125 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59200 375 / 1e-123 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 377 / 2e-123 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 379 / 2e-122 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74630 372 / 3e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 370 / 8e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G012600 [exp] 456 / 2e-153 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 427 / 3e-141 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 414 / 3e-136 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 411 / 4e-135 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 404 / 1e-134 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G135600 [exp] 404 / 4e-134 AT4G38010 672 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G019500 [exp] 404 / 3e-133 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.018G035900 [exp] 399 / 1e-132 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.002G258766 [exp] 398 / 2e-132 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041097 [exp] 718 / 0 AT5G66520 367 / 2e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 442 / 4e-148 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 439 / 1e-146 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 436 / 4e-146 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 432 / 2e-144 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 409 / 3e-134 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 406 / 2e-133 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 399 / 2e-130 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 387 / 8e-127 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 390 / 1e-126 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.008G106500.1 pacid=42808654 polypeptide=Potri.008G106500.1.p locus=Potri.008G106500 ID=Potri.008G106500.1.v4.1 annot-version=v4.1 ATGAGCATATCTTCTTCCACTCCTTATCTCTCACCAGTACCCAGCAAAACCACAGCACTCAACTCTCAACAAAAACAGCATTTAAGAAAACCTGACCATG CCATTTCTCTTCTCCAAAACTGCAAAAACCCTAAAGATCTAATACAACTACACACCCTTCTCATAAAAACCTCTCTTATCAAAGAAAAGTATGCCTTTGG CCGTCTTTTATTGTCATTTGCCTCATTTGACAATCTGGGCTCTCTTAATTACGCTCAAAAACTTTTTGATACTGTTGATATCCCAAGAAACTCATTTATG TATACTACCATGATAAAAGCCTATGCAAATTTTGGTAATCCAAGGGAGGCATTTGCTTTTTATTCAAGAATGTTGTGTGATCAGCGTTATGTGTATCCTA ATGATTTTACCTTTACTTATGTGTTTTCTGCTTGTTCTAAGTTTAATGGTGTTTTTGAAGGCAAGCAGGCTCATGCCCAGATGATAAAATTTCCTTTTGA GTTTGGTGTTCATTCTTGGAATTCTTTATTGGATTTTTATGGGAAAGTAGGGGAGGTGGGGATTGTGGTTCGTCGAGTATTTGATAAAATTGAGGGTCCT GATGTTGTTTCTTGGAATTGCTTGATTAACGGGTATGTGAAGTCAGGAGATTTGGATGAGGCACGAAGGCTTTTTGATGAAATGCCTGAAAGAGATGTTG TGTCTTGGACTATAATGCTTGTGGGTTACGCTGATGCTGGTTTTTTGAGTGAGGCATCTTGTTTGTTTGATGAAATGCCGAAAAGGAACTTGGTTTCTTG GAGTGCATTGATTAAGGGTTATATACAAATTGGTTGTTATAGTAAGGCTTTGGAGCTTTTCAAGGAGATGCAAGTTGCTAAAGTTAAAATGGATGAGGTC ATAGTAACGACTTTGCTCTCTGCATGTGCTAGGCTGGGGGCTTTGGATCAGGGTCGTTGGCTCCACATGTATATAGATAAACATGGGATCAAAGTTGATG CCCATTTATCAACAGCTTTGATTGATATGTACAGTAAATGTGGGCGAATTGACATGGCCTGGAAAGTTTTTCAAGAAACAGGGGATAAGAAGGTATTTGT GTGGAGTTCTATGATTGGTGGGCTGGCAATGCACTCGTTTGGGGAGAAAGCTATTGAGCTCTTCGCCAAGATGATAGAGTGTGGAATTGAACCGAGTGAA ATTACATACATCAACATTTTAGCAGCGTGTACTCATTCAGGTCTTGTTGACGTTGGGTTGCAGATATTTAATAGAATGGTGGAAAATCAGAAACCAAAAC CAAGAATGCAGCATTATGGATGCATTGTAGATTTACTAGGTCGTGCAGGTCTGTTGCATGATGCATTTCGGGTTGTTGAAACAATGCCTGTGAAAGCGGA TCCAGCTATATGGAGAGCCCTCCTCAGTGCTTGTAAACTACACAGAAATGTCGAGCTGGGAGAGCAAGTTGGGAGGATTTTAATTAAGATGGAGCCACAA AATGACATGAACTACGTGCTTTTCTCCAATGTTTATGCAGCAGTTAATAGATGGGATATTTCTGGGAAGTTGAGGAGAGAGATGAAAGTAAGAGGTATGC AAAAAAATCCTGGATGCAGCTCCATTGAACTCAACGGTGCAGTCCATGAGTTTGTTTCTAGAGACCATTCTCATCCCCAGAGTCAAGTAATTTATGAGTT GTTGCATATATTGACCAATCATATGGTGCAAGAAGATCATGAACCAATGATGACTATCATGGCTGAGAACCAGGGCATTCGGTGA
AA sequence Show only first row Show all	>Potri.008G106500.1 pacid=42808654 polypeptide=Potri.008G106500.1.p locus=Potri.008G106500 ID=Potri.008G106500.1.v4.1 annot-version=v4.1 MSISSSTPYLSPVPSKTTALNSQQKQHLRKPDHAISLLQNCKNPKDLIQLHTLLIKTSLIKEKYAFGRLLLSFASFDNLGSLNYAQKLFDTVDIPRNSFM YTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPNDFTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRRVFDKIEGP DVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEV IVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSE ITYINILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSACKLHRNVELGEQVGRILIKMEPQ NDMNYVLFSNVYAAVNRWDISGKLRREMKVRGMQKNPGCSSIELNGAVHEFVSRDHSHPQSQVIYELLHILTNHMVQEDHEPMMTIMAENQGIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.008G106500 [exp]	0	1
AT5G07900			Mitochondrial transcription te...		Potri.010G022700 [exp]	2.82	0.8981
AT2G15690			Tetratricopeptide repeat (TPR)...		Potri.014G038900 [exp]	9.16	0.8969
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Potri.005G197900 [exp]	16.00	0.9023
AT5G02860			Pentatricopeptide repeat (PPR)...		Potri.001G297300 [exp]	16.12	0.8967
AT4G37300		MEE59	maternal effect embryo arrest ...		Potri.009G041100 [exp]	21.00	0.8902
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.003G061600 [exp]	21.35	0.8870
AT4G31210			DNA topoisomerase, type IA, co...		Potri.006G279700 [exp]	39.16	0.8534
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Potri.009G100900 [exp]	40.65	0.8694
AT5G20300		Toc90	translocon at the outer envelo...		Potri.018G123300 [exp]	40.98	0.8780
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Potri.002G160650 [exp]	41.56	0.8906

Compare expression of checked genes

Potri.008G106500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.