Plant FIBer expression Database

Pt-PM36.1 (Potri.008G106600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-PM36.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G16990 296 / 1e-102 Haem oxygenase-like, multi-helical (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016885
[exp]
313 / 4e-109 AT3G16990 278 / 2e-95 Haem oxygenase-like, multi-helical (.1)
Lus10037751
[exp]
311 / 1e-108 AT3G16990 276 / 1e-94 Haem oxygenase-like, multi-helical (.1)
Lus10000819
[exp]
42 / 0.0002 AT5G32470 575 / 0.0 Haem oxygenase-like, multi-helical (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0230 HO PF03070 TENA_THI-4 TENA/THI-4/PQQC family
Representative CDS sequence
>Potri.008G106600.1 pacid=42806703 polypeptide=Potri.008G106600.1.p locus=Potri.008G106600 ID=Potri.008G106600.1.v4.1 annot-version=v4.1
ATGGATCCTGTAGAGAAGAATGGTGTGATCGATAGGTGGGTGAAGAAGCACCTTGTACTATATACAGGAGCTACCAGACATCCTTTCATTCTCAGCATAA
GAGATGGGACCATCGACTTCTCCTCTTTCAAGAGATGGCTTGGGCAAGATTACATATTTGTTAGAGAGTTTGTTCCTTTTGCTGCAAGTGTGTTGCTTAA
GGCCTCCAAGAATTCAGATGATAACAGTGATATGGAAGTCATACTGAGTGGGCTAGCTTCTCTAAGTGATGAGATTTCATGGTTCAAGCAAGAGGCAGCC
AAGTGGGATGTTCCTCTCTCTGATGTTGTTGTCCACAAGTCAAACCAGAATTATTGCAGATTTCTGGAGAGTTTGATGTTACCAGCAGTTGAGTATTCCG
TGGTCTTTACAGCCCTCTGGGCCATTGAAACAGTATACCAAGAGAGCTTTTCCCATTGCCTCGAAGATGGCAGCAAAACCCCACCGGAGTTACTGGAGGC
TTGCAAACGATGGGGCAGTGAAGGTTTTGGTGAATTTTGCCGCTCACTTAAAAAAATTGTCAATCGATGTCTAGAGAAAGCTCCAGACGAAGAGCTCAAA
AAAGCTGAAGTGACATTTCTGCATGTCCTTGAGCTTGAAATTGAATTTTGGGACATGAGCCATGGGGGACCTAAATGA
AA sequence
>Potri.008G106600.1 pacid=42806703 polypeptide=Potri.008G106600.1.p locus=Potri.008G106600 ID=Potri.008G106600.1.v4.1 annot-version=v4.1
MDPVEKNGVIDRWVKKHLVLYTGATRHPFILSIRDGTIDFSSFKRWLGQDYIFVREFVPFAASVLLKASKNSDDNSDMEVILSGLASLSDEISWFKQEAA
KWDVPLSDVVVHKSNQNYCRFLESLMLPAVEYSVVFTALWAIETVYQESFSHCLEDGSKTPPELLEACKRWGSEGFGEFCRSLKKIVNRCLEKAPDEELK
KAEVTFLHVLELEIEFWDMSHGGPK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G16990 Haem oxygenase-like, multi-hel... Potri.008G106600
[exp]
0 1 Pt-PM36.1
AT3G10740 ATASD1, ARAF1, ... ARABIDOPSIS THALIANA ALPHA-L-A... Potri.006G027700
[exp]
1.73 0.7843
AT5G45310 unknown protein Potri.004G234300
[exp]
6.70 0.6585
AT1G15670 Galactose oxidase/kelch repeat... Potri.001G007000
[exp]
8.00 0.7202
AT3G02875 ILR1 IAA-LEUCINE RESISTANT 1, Pepti... Potri.006G207400
[exp]
9.00 0.6772 ILL1,Pt-ILR1.2
AT2G39020 Acyl-CoA N-acyltransferases (N... Potri.010G224800
[exp]
10.72 0.7169
AT4G32860 unknown protein Potri.006G236700
[exp]
12.12 0.6320
AT1G75080 BZR BZR1 BRASSINAZOLE-RESISTANT 1, Bras... Potri.002G133700
[exp]
18.16 0.6701 BES1.2
AT1G07430 HAI2 highly ABA-induced PP2C gene 2... Potri.015G018800
[exp]
18.38 0.6621
AT3G48530 KING1 SNF1-related protein kinase re... Potri.012G097000
[exp]
18.76 0.6991
AT1G14780 MAC/Perforin domain-containing... Potri.002G234700
[exp]
21.16 0.6613

Potri.008G106600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.