Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49430 1728 / 0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) AT2G47410 1165 / 0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2) AT5G52820 87 / 3e-17 WD-40 repeat family protein / notchless protein, putative (.1) AT3G49660 84 / 8e-17 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G21390 79 / 3e-14 Coatomer, alpha subunit (.1) AT2G41500 77 / 6e-14 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT3G16650 76 / 1e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 75 / 2e-13 PRL1 pleiotropic regulatory locus 1 (.1) AT5G25150 75 / 4e-13 TAF5 TBP-associated factor 5 (.1) AT4G02730 73 / 4e-13 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142700 [exp] 2897 / 0 AT5G49430 1753 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) Potri.014G121100 [exp] 1204 / 0 AT2G47410 1507 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2) Potri.007G009500 [exp] 84 / 6e-17 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 81 / 6e-16 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 83 / 1e-15 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.009G058000 [exp] 80 / 6e-15 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.006G045800 [exp] 78 / 4e-14 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.006G250200 [exp] 76 / 4e-14 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.002G051900 [exp] 76 / 5e-14 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037748 [exp] 1769 / 0 AT5G49430 1224 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) Lus10016882 [exp] 1032 / 0 AT5G49430 995 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) Lus10016881 [exp] 794 / 0 AT5G49430 453 / 3e-138 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) Lus10003487 [exp] 82 / 4e-16 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039597 [exp] 82 / 2e-15 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10004167 [exp] 81 / 5e-15 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10039636 [exp] 78 / 7e-15 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 80 / 1e-14 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10029493 [exp] 78 / 2e-14 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10025780 [exp] 79 / 4e-14 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.008G106800.3 pacid=42807533 polypeptide=Potri.008G106802.1.p locus=Potri.008G106800 ID=Potri.008G106800.3.v4.1 annot-version=v4.1 ATGGCTCTTCGGAAGTACATTCCTTCAAGTGATGCACCTTCTGGTAGTATGAAGCCTTTGATCTTTTCAAGTAAGGGGCGTGAGAATGCCCAACTTGCAG AGCCAGAGACAAGTCACAGAAGGGTGAAAGATGTGGATGTTGACCTTAGTGAAGTTTACTTTTTAATCATGCATTTCCTTTCAGCTGGGCCATGTCAGAG AACTTATGTACAGTTTTGGAATGAACTTCTTGAACATCAACTTTTACCTAGAAGATATCATGCATGGTATTCAAGACGTGAAAGGCTTAGTGGGGATGAA AATGATAATGGTCTATCGTTTCCATTAAGTTACAAAAGTTTGGAGGAGCGGTATCCTCACATTGAGAAGAATCACTTGGTAAAGCTTTTGAAGCAATTGT TGCTCAATACAGCCTCTCCATCAGAAGGCTTGATTTCTGATGTTCCAAATGCTGCTGATGTTCCTACTCTTCTGGGAATGGGTTCATTTTCACTTTTGAG TTGTGATAGAGTTAAGGGAAATGGCCAAGTCAAGCACCCCCCTGCTCACATGCGATGGCCTCATAGACATGCTGATCAGGTTCGTGGGTTAAGTTTGAGG GAAATTGGGGGTGGTTTTGCAAGACACCATCGTGCACCATCTATTCGTGCAACATGCTACGCTATTGCAAAACCATTAACCATGGTTCAGAAAATGCAAA ATGTCAAGAGAGTACGTGGACATCGGAATGCTGTCTATTGTGCAATATTTGATCGCTCAGGGAGATATGTTGTCACTGGTTCAGACGATCGTCTTGTAAA AATCTGGTCCATGGAAACTGCTTTTTGCTTAGCTAGCTGTCGTGGGCATGAAGGGGACATTACTGACCTGGCTGTAAATTCAAATAATACCTTAGTGGCA TCCTCTTCAAATGATTGCATAATTCGAGTTTGGCGTTTGCCAGATGGGATGCCAATATCAGTTCTGCGTGGACATTCTGCAGCTGTTACTTCCATTGCAT TTAGTCCAAGGCCTGGTTCTGCATACCAGCTTTTGTCGTCTTCTGATGATGGAACATGTAGGATTTGGGATGCCAGGTCTTCCAACTTAGGTGCACGAAT ATATGTTCCAAGGCCACCGGATCCTGTGGCTGGAAAGAACAGCGGTCCATCCTCAAGTAGTGGTCCTCAGAGCCATCAAATTTTTTGTTGTGCATTCAAT GCTCATGGAAATGTATTTGTCACTGGTAGCTCTGACCACCTTGCTAGGGTGTGGAATGCTCTTAAATCCAACACGGATGATTCAGACCAGCCAAATCATG AGATAGATGCGTTACCTGGCCATGAGAATGATGTCAACTATGTTCAATTTAGTGGTTGTGTCGTGCCATCTAGATTTTCTATGGCTGACAGCTCAAAGGA AGAGAATATTCCAAAATTTAAAAATTCATGGTATTCTCAAGACAGCATAGTTACCTGTTCTCGAGATGGAAGTGCAATTATTTGGATTCCAAAATCACGT AGATCTCATGGGAAAGCTGGCCGTTGGATACGACATTATCACCTGAAAGTTCCTCCTCCACCAATGCCTCCTCAACCTCCACGAGGAGGTCCACGACAGA GAATTCTTCCAACTCCTCGTGGGGTGAACATGATCGTGTGGAGTCTGGATAATCGTTTTGTCCTTGCTGCTATTATGGATTGCAGAATATGTGTTTGGAA TGCTGCTGATGGTAGTTTGGTGCATTCTTTGACTGGTCATACTCAATCTACATATGTTCTTGATGTTCATCCTTTCAACCCAAGAATAGCTATGAGCGCT GGCTATGATGGAAAAACAATAGTGTGGGATATTTGGGAGGGCACACCCATCCGGATCTATGAAATTTCACATTTCAAGTTGGTAGATGGAAAGTTTTCAC CGGACGGTACATCCATTATACTTTCAGATGATGTTGGTCAGCTGTACATATTAAATACAGGCCAAGGCGAGTCCCAAAAGGATGCTAAATATGATCAGTT CTTCCTTGGTGATTATCGGCCTCTGATACAAGATGCCCACGGAAATGTACTTGACCAGGAAACTCAACTAGTACCGTTCCGACGGAATATGCAAGATCTC CTTTGTGACTCAGGTTGGATGATTCCCTATACAGAACCTTACCAAAGCACGTATCAGCAGAGACGATTAGGAGCTTTGGGTGTGGAGTGGAAGCCATCTT CTATAAGATTTGCTGCTGGGCCAGACTTCAGTCTAGACCCAGATAACCAAATGCTCCCCTTGGCTGACTTGGATGTATTGGTTGAGCCACTGCCTGAGTT TATGGATGCCATGGATTGGGAACCAGAAAATGACATGCAAAGTGATGACAATGATTCAGAGTACAATGCCCCTGAAGAGTGTTCTTCTGAGGCGGAGCAA GGAAGTTCAAATTCTAGTTCATCTGAAGATCCAGAATGTACTGCAGAAGACAGTGGGGCTGAGGGCGGGGATGGTTTCCGAAGGTCTAAAAGGAGAAAAC AAAAGGGTGAAATTGAGATAATGACTTCTTCTGGGAGGCGTGTTAAGAGGAAGAATTTGGATGAGTGTGATGGAAATTCAATTAGAAGTGATCGAGCTAG GAAATCAAGGATTGGCCGGAAAGTTTCAAAGAAGAAGTCTTCCACTTCAAAGGCCTTGAGACCTCAAAGAGCTGCTGCCCGCAATGCGCGTAGTTTGTTT TCAAAAATTACTGGAACAGCTACAGATGGAGAAGATGAAGATGGTTCGGAAGGTGACTTATCAGAAACTGAATCTGGCATGCAAGACTCAAATATTGAAA GTGATGAATCAAATAGATCTTTGGACAACGACGGGAACAGGAATTTGAAGGGAAAAGATATCCTGGAAGAGTCTGAAGACTTTGCTGAATCACGTGAACT TACTGAATCTCACATGAATACTATAAATAGGAGGAGATTGGTCTTTAAATTGCCAGTTCGCGATTCTATTAAGATTGTATTCCCAGAAAGTGGAATACAC AAGTGTGACTACCAGGTTGATGTGGTTGGATCATCGTCCAAAGCTCCTCATGAAGCCACCGAGGTCAATGGGGTTCCTACAAGCTCTCAAGATCCGGGAT ACTTTTCTGGTGATGCACATTGCGGCAGAATGGATGGAGGAAGAAGAGCACAGATAGACCATTATCCTTTGGACCTGTCTGAAGGATACAAAAATGGGGA TATCAGATGGGGAGGTGTAAAGGCTCGTACTTCTAAGCGTCAGAGATTAGGAGAATCCATTTCATCAGCAGCATATACTGGATCTAGTGCATGCCTTGGT GAACAAAATGAAAATGAAAATGAAAATAGTCTCAACAGATTCTCAAAATTTCAGGAAGATCATGGCACAATACCCCCTACTTTAGAAGTTCAAAATAATG TGGACAATGAAGGAGTCATACCAGTGAATGAAAGAAATGCTGGGCCCGATACCTCAGAGGTTGTAAATGATGTGTCCAGTGGTAAAGTGCACTCAACCTT CAACAGATGCATGGATTTTGAAACATTACCAAACCTGGGTCACATGGCTAATGAGAATGACAACCCTCCTGATCTCAGAGAGAGCTTCCCATCTTTCTCA ACAATGATAAGGATAAGATCAAAAAAGATATTGAAGGATTCACTAGATAATCAGGGAAATGGTGGGTGTGATTTATCAACTGATAAGTCTGCAAACATGA CACAGTATCCAGTAAAGGAGATGCTGGAGCATGATGGTTCCAGTGGAAATACTCCAGAATATAAAGGTGACGGATTGGAAGAATCGGATACACGAATTGG TGAAATTTCCATGCCATCCTTCGATGACTCAGTTGGGTCTCGTTCACATCCCAAAAAGATGTTTGATGTTGTTTATAGAAGGTCAAAGCCAGGCAGAGGT AAAATTAACTCAGAACGTGATGGCAGCATCAGAGAAGAAACTTCAATTGCTTGTAACCCTCATCTTGACTCCAGAGGGGATTCCTATGAAGGCACAATTG GTGGATCTCATAGATTACATTCCATGGGCTCAAAGGGAACACATGATGCAAATATTGCAATCAATGATCTCCATTTGGGGCAGGGACATGAATCAGATGA TACTTGTAGAGATACCCACAATGGTTCTGTTAGTAGATTTCAGCTTCCATGTGAAGAATGGGGATCAAGCTCAAGGATGACAGTTCGATTGAGATCTACT AGAAACAGGAAAGCCAGTTGTCACTTTCATGACACAAGTCCAGTAGATGGAAAGAGGAAGTTGCATCAGTCAGCCAAAAGAGCGTCATGGTTAATGTTGT CAATGCATGAGGAGGGCTCTCGTTACATCCCCCAACAGGGGGATGAATTAGCATACTTGAGACAGGGCCATCAAGAGTACATAGACTGCATGAAGTCAAA AGAAGCAGGCCCTTGGAAGACAATCAAGGGAAACATAAGGGCAGTTGAATTCTGTAAGGTTGAAGCCCTCGAGTATGCTCCATTTGCAGGATCTGGGGAT AGTTGCTGCAAAATGACGCTTAAATTTATAGATCCTACTTCCAGTGCATTTCAGAGATCATTCAAATTAACTCTACCTGAAATGACTGGCTTCCCAGATT TTCTTGTTGAAAAAACTCGGTTTGATGCTGCCATACAGAGGGATTGGAGTCGCAGGGATAAATGTAAGGTCTGGTGGAAAAATGAGGGTGAAGAAGATGG TGATTGGTGGTATGGCCGGGTTTTATATACAAAGCCCAAATCTTCTGAATTTCCTGAGAGTCCATGGGAGAGGTGTACTGTTCAGTATAAGAGTGATCCC AAAGAACTGCATCATCACAGTCCGTGGGAGCTTTTTGATGATGGTACCATGTTTGAGCAGCCTCATATAGATGAGGAGACTATGAACAAGTTGCTGTTTG CCTTCGCCAAACTAGAGCGAGCAGGCCAAAAACACCAGGATCACTATGGGGTTGAAAAGCTAAGGCAAGTTTCGCAGACGTCTCGTTTTACTAACGGGTT CGCAGTTCCATTGTCTCTTGAAGTGATCCAGGCAAGGTTAGAAAACAACTACTATAGAAGCTTGGAGGCATTGAAGCATGACTTTGAAGTCATGTTGTTG AATGCAGAATCATACTTTGCGAAGCAGGCAGAGCTCTTGACGAAAATGAAACGTTTATCAAACTGGTTCACACGGACATTATCATCTTTGTAA
AA sequence Show only first row Show all	>Potri.008G106800.3 pacid=42807533 polypeptide=Potri.008G106802.1.p locus=Potri.008G106800 ID=Potri.008G106800.3.v4.1 annot-version=v4.1 MALRKYIPSSDAPSGSMKPLIFSSKGRENAQLAEPETSHRRVKDVDVDLSEVYFLIMHFLSAGPCQRTYVQFWNELLEHQLLPRRYHAWYSRRERLSGDE NDNGLSFPLSYKSLEERYPHIEKNHLVKLLKQLLLNTASPSEGLISDVPNAADVPTLLGMGSFSLLSCDRVKGNGQVKHPPAHMRWPHRHADQVRGLSLR EIGGGFARHHRAPSIRATCYAIAKPLTMVQKMQNVKRVRGHRNAVYCAIFDRSGRYVVTGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVNSNNTLVA SSSNDCIIRVWRLPDGMPISVLRGHSAAVTSIAFSPRPGSAYQLLSSSDDGTCRIWDARSSNLGARIYVPRPPDPVAGKNSGPSSSSGPQSHQIFCCAFN AHGNVFVTGSSDHLARVWNALKSNTDDSDQPNHEIDALPGHENDVNYVQFSGCVVPSRFSMADSSKEENIPKFKNSWYSQDSIVTCSRDGSAIIWIPKSR RSHGKAGRWIRHYHLKVPPPPMPPQPPRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNAADGSLVHSLTGHTQSTYVLDVHPFNPRIAMSA GYDGKTIVWDIWEGTPIRIYEISHFKLVDGKFSPDGTSIILSDDVGQLYILNTGQGESQKDAKYDQFFLGDYRPLIQDAHGNVLDQETQLVPFRRNMQDL LCDSGWMIPYTEPYQSTYQQRRLGALGVEWKPSSIRFAAGPDFSLDPDNQMLPLADLDVLVEPLPEFMDAMDWEPENDMQSDDNDSEYNAPEECSSEAEQ GSSNSSSSEDPECTAEDSGAEGGDGFRRSKRRKQKGEIEIMTSSGRRVKRKNLDECDGNSIRSDRARKSRIGRKVSKKKSSTSKALRPQRAAARNARSLF SKITGTATDGEDEDGSEGDLSETESGMQDSNIESDESNRSLDNDGNRNLKGKDILEESEDFAESRELTESHMNTINRRRLVFKLPVRDSIKIVFPESGIH KCDYQVDVVGSSSKAPHEATEVNGVPTSSQDPGYFSGDAHCGRMDGGRRAQIDHYPLDLSEGYKNGDIRWGGVKARTSKRQRLGESISSAAYTGSSACLG EQNENENENSLNRFSKFQEDHGTIPPTLEVQNNVDNEGVIPVNERNAGPDTSEVVNDVSSGKVHSTFNRCMDFETLPNLGHMANENDNPPDLRESFPSFS TMIRIRSKKILKDSLDNQGNGGCDLSTDKSANMTQYPVKEMLEHDGSSGNTPEYKGDGLEESDTRIGEISMPSFDDSVGSRSHPKKMFDVVYRRSKPGRG KINSERDGSIREETSIACNPHLDSRGDSYEGTIGGSHRLHSMGSKGTHDANIAINDLHLGQGHESDDTCRDTHNGSVSRFQLPCEEWGSSSRMTVRLRST RNRKASCHFHDTSPVDGKRKLHQSAKRASWLMLSMHEEGSRYIPQQGDELAYLRQGHQEYIDCMKSKEAGPWKTIKGNIRAVEFCKVEALEYAPFAGSGD SCCKMTLKFIDPTSSAFQRSFKLTLPEMTGFPDFLVEKTRFDAAIQRDWSRRDKCKVWWKNEGEEDGDWWYGRVLYTKPKSSEFPESPWERCTVQYKSDP KELHHHSPWELFDDGTMFEQPHIDEETMNKLLFAFAKLERAGQKHQDHYGVEKLRQVSQTSRFTNGFAVPLSLEVIQARLENNYYRSLEALKHDFEVMLL NAESYFAKQAELLTKMKRLSNWFTRTLSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.008G106800 [exp]	0	1
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.015G092100 [exp]	3.46	0.7868
AT4G17140			pleckstrin homology (PH) domai...		Potri.001G148800 [exp]	3.87	0.7778
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.010G142700 [exp]	4.00	0.8244
AT5G11850			Protein kinase superfamily pro...		Potri.018G053800 [exp]	7.07	0.7611
AT5G65960			GTP binding (.1)		Potri.007G064500 [exp]	8.00	0.7520
AT3G15920			Phox (PX) domain-containing pr...		Potri.001G201900 [exp]	10.24	0.7529
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.003G221100 [exp]	10.39	0.8055
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Potri.009G073800 [exp]	13.56	0.7459
AT2G19390			unknown protein		Potri.018G056400 [exp]	13.74	0.7699
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Potri.010G174900 [exp]	16.30	0.7552

Compare expression of checked genes

Potri.008G106800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.