Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16980 217 / 8e-75 NRPE9A, NRPD9A, NRPB9A RNA polymerases M/15 Kd subunit (.1) AT4G16265 212 / 8e-73 NRPE9B, NRPD9B, NRPB9B RNA polymerases M/15 Kd subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142500 [exp] 151 / 4e-49 AT4G16265 146 / 3e-47 RNA polymerases M/15 Kd subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016880 [exp] 165 / 2e-54 AT3G16980 157 / 6e-51 RNA polymerases M/15 Kd subunit (.1) Lus10037747 [exp] 97 / 9e-27 AT3G16980 89 / 1e-23 RNA polymerases M/15 Kd subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF01096 [poplar] [flax] TFIIS_C Transcription factor S-II (TFIIS)
Representative CDS sequence Show only first row Show all	>Potri.008G106900.1 pacid=42806925 polypeptide=Potri.008G106900.1.p locus=Potri.008G106900 ID=Potri.008G106900.1.v4.1 annot-version=v4.1 ATGAGTACCATGAAATTTTGCCGCGAATGCAACAACATTCTGTACCCTAGAGAAGACAGAGATCAGAAGATCCTTCTTTACGCTTGCCGCAACTGTGATC ACCAGGAGATTGCTGATGATAACTGTGTGTACCGAAATGAGGTGCATCACTCGGTAGCAGAGAGAACTCAGGTATTGCAAGATGTAGCTGCTGACCCTAC TCTCCCTCGCACTAAAGCTGTTACTTGCACTGTATGCAAACATCCTGAAGCTGTCTTCTTCCAGGCAACTTCTAGGGGAGAGGAGGGTATGACGCTGTTT TTCGTGTGCTGCAACCCAAATTGTGGCCATAGGTGGAGAGATTGA
AA sequence Show only first row Show all	>Potri.008G106900.1 pacid=42806925 polypeptide=Potri.008G106900.1.p locus=Potri.008G106900 ID=Potri.008G106900.1.v4.1 annot-version=v4.1 MSTMKFCRECNNILYPREDRDQKILLYACRNCDHQEIADDNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVTCTVCKHPEAVFFQATSRGEEGMTLF FVCCNPNCGHRWRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16980		NRPE9A, NRPD9A,...	RNA polymerases M/15 Kd subuni...		Potri.008G106900 [exp]	0	1
AT1G77750			Ribosomal protein S13/S18 fami...		Potri.002G088400 [exp]	2.82	0.8797
AT5G52370			unknown protein		Potri.009G040100 [exp]	5.00	0.8525
AT3G05810			unknown protein		Potri.013G007600 [exp]	6.70	0.8178
AT1G26880			Ribosomal protein L34e superfa...		Potri.017G082200 [exp]	7.07	0.8754	Pt-RPL34.5
AT2G44525			Protein of unknown function (D...		Potri.014G179500 [exp]	7.21	0.8196
AT5G64140		RPS28	ribosomal protein S28 (.1)		Potri.010G245400 [exp]	8.36	0.8403	Pt-RPS28.1
AT3G52580			Ribosomal protein S11 family p...		Potri.001G218700 [exp]	11.48	0.8609
AT3G13674			unknown protein		Potri.018G082800 [exp]	12.72	0.8266
AT3G53740			Ribosomal protein L36e family ...		Potri.012G142600 [exp]	13.41	0.8653
AT1G24050			RNA-processing, Lsm domain (.1...		Potri.008G146200 [exp]	13.41	0.7677

Compare expression of checked genes

Potri.008G106900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.