Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49400 147 / 4e-43 zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142400 [exp] 222 / 2e-72 AT5G49400 151 / 1e-44 zinc knuckle (CCHC-type) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016879 [exp] 186 / 4e-58 AT5G49400 172 / 9e-53 zinc knuckle (CCHC-type) family protein (.1) Lus10037745 [exp] 184 / 2e-57 AT5G49400 172 / 6e-53 zinc knuckle (CCHC-type) family protein (.1) Lus10037744 [exp] 184 / 2e-57 AT5G49400 172 / 6e-53 zinc knuckle (CCHC-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [poplar] [flax] Retroviral_zf PF13917 [poplar] [flax] zf-CCHC_3 Zinc knuckle
Representative CDS sequence Show only first row Show all	>Potri.008G107100.1 pacid=42806361 polypeptide=Potri.008G107100.1.p locus=Potri.008G107100 ID=Potri.008G107100.1.v4.1 annot-version=v4.1 ATGTCAAGTAAGAAAGAAGAGAAATCTCAGGTTGCGGCGGAGAGGATAAAGGCCGCAGCCTTGAGTGCGGCGAAAGGTTTAAGTAGAGCCCAAGCAGAAC GGGCAGCAGCAGCTGCTGCTCGTAATGTGAACGCTTATGGGCAAAAAGAAGAAGGGCCGAGTCGATGGCAAGAGAAACGAGAAGCAAAGAGGCAGATGTA TTTAATGAGTACGGAAAAAGCAGTGAGATTGGGTGAGCGAAAAGATCTTAATTCTATGTCAAAAGCTTTTGGTGGTAATGGACAGTGCCAGAAGTGCTTT CAAAGTGGGCATTGGACTTACGAGTGTAAGAATGAGAGGGTTTATATGTCGAGGCCATCAAGGACTCAACAACTTAAGAATCCAAAGTTGAGGATGGAGG TTTCGACTTCTTGTGATTTGGAGAATCCAGAAGGGGAGGATGAGGAGGGGCGAAAGAGGGAGAAGAAGAGTAAGAGAAAGCACAGGTCAGATTCGGATTC TGGGAGTGACAGCGAGGCTTCTGTTTTCGAGACAGATAGTGGGTCGTCGTCTGTGACAGGGTCGGAGTCTTCGGATGAGGAAAGTAGTTCGGGGTGCAGT TCATCTTCTTCGGAGGAAGAGAGGCGGCGGAGAAGGAAGAAAAGGAAGCAGAAGAAGAAAGAGAGGCGCAGGAGGTATAGCTCGTCCTCTGATGAGTCTT CTGATTCGGATTCGGGTTCAGAATCTGATTCTGATGACAAGAGCAGCAGGAAGAAGAGGAGGCATAGCAGGAGGAGATGA
AA sequence Show only first row Show all	>Potri.008G107100.1 pacid=42806361 polypeptide=Potri.008G107100.1.p locus=Potri.008G107100 ID=Potri.008G107100.1.v4.1 annot-version=v4.1 MSSKKEEKSQVAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKREAKRQMYLMSTEKAVRLGERKDLNSMSKAFGGNGQCQKCF QSGHWTYECKNERVYMSRPSRTQQLKNPKLRMEVSTSCDLENPEGEDEEGRKREKKSKRKHRSDSDSGSDSEASVFETDSGSSSVTGSESSDEESSSGCS SSSSEEERRRRRKKRKQKKKERRRRYSSSSDESSDSDSGSESDSDDKSSRKKRRHSRRR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49400			zinc knuckle (CCHC-type) famil...		Potri.008G107100 [exp]	0	1
AT3G16310			mitotic phosphoprotein N' end ...		Potri.001G188300 [exp]	3.60	0.8118
AT5G13970			unknown protein		Potri.014G143800 [exp]	11.48	0.8015
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Potri.018G140100 [exp]	13.92	0.8022
AT4G10920		KELP	transcriptional coactivator p1...		Potri.001G089400 [exp]	18.38	0.7703
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Potri.002G212800 [exp]	20.34	0.7846
AT2G33550	Trihelix		Homeodomain-like superfamily p...		Potri.003G163000 [exp]	22.31	0.7911
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Potri.009G053200 [exp]	27.85	0.8010
AT2G31410			unknown protein		Potri.014G145600 [exp]	27.87	0.7238
AT3G11450			DnaJ domain ;Myb-like DNA-bind...		Potri.001G035800 [exp]	28.12	0.7233
AT3G06790			plastid developmental protein ...		Potri.010G007200 [exp]	30.00	0.7797

Compare expression of checked genes

Potri.008G107100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.