Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06670 1169 / 0 binding (.1.2) AT5G49390 258 / 5e-77 unknown protein AT5G49380 220 / 4e-66 unknown protein AT5G49370 154 / 5e-44 Pleckstrin homology (PH) domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142200 [exp] 1582 / 0 AT3G06670 1138 / 0.0 binding (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037742 [exp] 1283 / 0 AT3G06670 1112 / 0.0 binding (.1.2) Lus10021547 [exp] 56 / 3e-08 AT3G06670 49 / 1e-06 binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04802 [poplar] [flax] SMK-1 Component of IIS longevity pathway SMK-1
Representative CDS sequence Show only first row Show all	>Potri.008G107300.1 pacid=42806283 polypeptide=Potri.008G107300.1.p locus=Potri.008G107300 ID=Potri.008G107300.1.v4.1 annot-version=v4.1 ATGGGCGCACAAGAGAAATCGCAAGCGAACTCCAACTCGATACAGCGGGTGAAGGTCTACCGTTTGAATGACGATGGAAAATGGGATGACCAGGGGACTG GGCATGTTACTGTTGACTATTTGGAGAGATCAGAAGATCTAGGCTTGTATGTTATTGATGAAGAAGACAACGAGACATTGCTTTTGCATCGTATAACCCC AGATGACATTTACAGAAAACAAGAAGATACAATAATTTCATGGAGAGATCCAGAATTTTCTACAGAATTAGCACTAAGCTTCCAAGAAACTACAGGGTGT TCGTACATTTGGGATCATATCTGTAATGTGCAAAGAAATCTACAGTTCAGTACTCTAAACAGTGAGACATTTCACAGCATGAACAGTGAGTTGAGAGAAT TGCCTGCTGTTGAACTTTCCACACTTCCTTTGATCCTTAAGACTGTGTCTGAGAGTGGTACTGCAGATCAGATGAGACTGACAGAGCTTATACTGAATGA TCAAGATTTTTTCCAGAAGCTGATGGATGTTTTCAGAATCTGTGAAGACCTAGAAAACATTGATGGTCTTCACATGATATTCAAAATAGTCAGAGGGATC ATTTTGTTCAACAGTCCTCAAATCTTTGAGAAAATATTTGGGGATGAATTGATCATGGATGTTATTGGTTCACTTGAGTATGATCCTGAGATTTCTCATG TCCAACATCATCGTGGTTTTCTGAAAGAGCACGTTGTTTTCAAGGAGGCCATACCAATCAAAGATCCCCATGTCCTGTCAAAGATACATCAGACGTACAG AGTTGGTTATTTGAAGGATGTTGTTTTGGCTAGAGTATTGGATGAGGCCACAGTTGCAAACCTGAATTCCATAGTTCATGCAAATAATGCTGTTGTTGTT TCTTTGTTAAAGGATGACAATACCTTTATTCAGGAATTGTTTGCTAGGTTGAGATCGCCCACCACATCTGCAGAATCAAAGAAAAATTTGGTATATTTCT TGCACGAGTTTTGTAGTTTGAGCAAGAGCATGCAGATGGTCCAGCAGCTCCGACTGTTTAGGGAGCTCATGAATGAAGGTATCTTTGACATCATTGCTGA TATATTGCAGAGTCAAGACAAGAAACTTGTCCTAACTGGAACAGATATCCTCATTCTTTTCTTGAATCAGGATCCAAACCTTCTGCGTTCTTATGTTGTT CGGCAGGAAGGAATCCCGCTACTAGGACTGTCGGTTAAAGGAATGATAACAGACTTTGGGGAGGACATGCACTGCCAGTTTCTTGAAATTCTTCGCAGTT TACTGGATTCCTATACACTGTCAGGAGCACAGAGAGATAATATAATTGAAATCTTCTATGAGAAGCACCTGAGCCAATTAATTGATGTTATAACAGCATC TTGTCCTGATGAGGTTCTTCCTCGATCAAGTGGTAAATCTTCAGGGCTTGTTGAGAGAGTTGACACTCATAATGGTGTGAAGCCAGAAATACTATCAAAC ATATGTGAATTGCTATGCTTCTGTGTTCTGCACCATCCATTTAGAATAAAGTGTAACTTTCTCCTTGATAATGTTATTGAAAAAGTCTTGACACTGACAA GAAGGAAAGAAAAGTACCTTGTTGCTGCTGCTGTTCGTTTTGTTCGCACTATCCTTTCCCGCCATGATGAGCATTTGATAAATCATTTTGTCAAGAACAA CCTCCTCAAACCAATTGTAGATGCCTTTTTGAGCAATGGTGACCGTTATAATTTGCTGAACTCTGCCATTTTAGAGCTTTTTGAGTATATCCGCAAGGAA AACTTGAAATTGTTGCTCAAGTATATAGTTGATTCATTCTGGAATGATTTGGTCAAATTCGAGCATTTGACCTCCATTCAGGCTCTAAAAGTTAAATATG AGCAGTGTCTAGAGCAGTGTGGAGCAAAAAGTACTGGTAGCACATTGGATCCAAGAAAACGAAATGATGAGCGTGCACTAGAAAAGGAAGAGGAAGATTA CTTCAATGAGGACAGTGATGAAGAAGACACGGCATCCGCATCCCATACTCAAAAGGCACAAGCTCAATCAGTCTCTCCCAATGGGGTTGCTGCAGGCTAC CCGTCATCAAGTCCAAGATCTGGAGGACTTGTTGATTATGATGATGATGAGGATGACGAAGACTATAGACCACCTCCTAAGAAACAGCTAGAAACACCTG AGGAAGATGAAGGAACAAGTGAATCCCTTAGGATGAAGCGGAAATTGCCTTCCAAGGATAAGGAGTCTGACCTAGTGAAGAAACAGCGATTAGCTAAACA CTCGAAGCCAAAAGAGAGTGTATTTGCTGCTTTATGTTCAACACTTAGCCATGCCGTCTTGCCCAGCAAGAAAGCTGCAACTGCCATGCACATAACTCCT TTGGATGGAAACAAAGGCCCAGTTGAAGAAAGTCATAGAGAGAATGATCCAGTCATTTCTAGAAGCTGTTCTGATAACAACAGCAATTCAAGTGAGGAAA ACCACAGGGAGAAGGATCCTGCTGGTCCTAAAAGCTGTTCTGATTGCTTGCACAGCACATCAGAAAATGGACAGATAATTGGAGATGATGGTCCATTAAT ACCACCCCCCAAATCCTCACCAGAAATGGCTGTAAATGGTTCTTAA
AA sequence Show only first row Show all	>Potri.008G107300.1 pacid=42806283 polypeptide=Potri.008G107300.1.p locus=Potri.008G107300 ID=Potri.008G107300.1.v4.1 annot-version=v4.1 MGAQEKSQANSNSIQRVKVYRLNDDGKWDDQGTGHVTVDYLERSEDLGLYVIDEEDNETLLLHRITPDDIYRKQEDTIISWRDPEFSTELALSFQETTGC SYIWDHICNVQRNLQFSTLNSETFHSMNSELRELPAVELSTLPLILKTVSESGTADQMRLTELILNDQDFFQKLMDVFRICEDLENIDGLHMIFKIVRGI ILFNSPQIFEKIFGDELIMDVIGSLEYDPEISHVQHHRGFLKEHVVFKEAIPIKDPHVLSKIHQTYRVGYLKDVVLARVLDEATVANLNSIVHANNAVVV SLLKDDNTFIQELFARLRSPTTSAESKKNLVYFLHEFCSLSKSMQMVQQLRLFRELMNEGIFDIIADILQSQDKKLVLTGTDILILFLNQDPNLLRSYVV RQEGIPLLGLSVKGMITDFGEDMHCQFLEILRSLLDSYTLSGAQRDNIIEIFYEKHLSQLIDVITASCPDEVLPRSSGKSSGLVERVDTHNGVKPEILSN ICELLCFCVLHHPFRIKCNFLLDNVIEKVLTLTRRKEKYLVAAAVRFVRTILSRHDEHLINHFVKNNLLKPIVDAFLSNGDRYNLLNSAILELFEYIRKE NLKLLLKYIVDSFWNDLVKFEHLTSIQALKVKYEQCLEQCGAKSTGSTLDPRKRNDERALEKEEEDYFNEDSDEEDTASASHTQKAQAQSVSPNGVAAGY PSSSPRSGGLVDYDDDEDDEDYRPPPKKQLETPEEDEGTSESLRMKRKLPSKDKESDLVKKQRLAKHSKPKESVFAALCSTLSHAVLPSKKAATAMHITP LDGNKGPVEESHRENDPVISRSCSDNNSNSSEENHREKDPAGPKSCSDCLHSTSENGQIIGDDGPLIPPPKSSPEMAVNGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06670			binding (.1.2)		Potri.008G107300 [exp]	0	1
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.004G081800 [exp]	1.00	0.9025
AT1G77310			unknown protein		Potri.002G078800 [exp]	1.73	0.8815
AT5G24740			Protein of unknown function (D...		Potri.001G455600 [exp]	2.00	0.8941
AT1G63500			Protein kinase protein with te...		Potri.001G104700 [exp]	2.00	0.8638
AT1G12930			ARM repeat superfamily protein...		Potri.014G141100 [exp]	3.16	0.8373
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.015G079400 [exp]	3.16	0.8580
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.013G150100 [exp]	3.74	0.8265
AT1G50030		TOR	target of rapamycin (.1.2)		Potri.001G289200 [exp]	4.24	0.8578	Pt-TOR.1
AT4G24900			unknown protein		Potri.012G098000 [exp]	5.65	0.8422
AT3G17450			hAT dimerisation domain-contai...		Potri.002G188400 [exp]	5.91	0.8574

Compare expression of checked genes

Potri.008G107300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.