Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16950 877 / 0 PTLPD1, LPD1 lipoamide dehydrogenase 1 (.1.2) AT4G16155 859 / 0 dihydrolipoyl dehydrogenases (.1) AT1G48030 245 / 3e-74 mtLPD1 mitochondrial lipoamide dehydrogenase 1 (.1.2) AT3G17240 234 / 6e-70 mtLPD2, LPD2 lipoamide dehydrogenase 2 (.1.2.3) AT3G54660 169 / 1e-45 ATGR2, EMB2360, GR glutathione reductase (.1) AT3G24170 144 / 5e-37 ATGR1 glutathione-disulfide reductase (.1.2.3) AT5G03630 43 / 0.0006 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142100 [exp] 992 / 0 AT3G16950 895 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.008G100800 [exp] 249 / 8e-76 AT3G17240 868 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.010G151400 [exp] 218 / 6e-64 AT3G17240 817 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.015G037800 [exp] 159 / 7e-42 AT3G54660 872 / 0.0 glutathione reductase (.1) Potri.001G050000 [exp] 153 / 2e-40 AT3G24170 857 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.003G178200 [exp] 153 / 3e-40 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037741 [exp] 905 / 0 AT3G16950 928 / 0.0 lipoamide dehydrogenase 1 (.1.2) Lus10016877 [exp] 900 / 0 AT3G16950 920 / 0.0 lipoamide dehydrogenase 1 (.1.2) Lus10032649 [exp] 236 / 7e-71 AT1G48030 892 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10037825 [exp] 235 / 2e-70 AT1G48030 922 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10017102 [exp] 235 / 3e-70 AT1G48030 918 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10043103 [exp] 234 / 1e-69 AT1G48030 889 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10018770 [exp] 171 / 4e-46 AT3G54660 879 / 0.0 glutathione reductase (.1) Lus10024857 [exp] 152 / 2e-39 AT3G54660 864 / 0.0 glutathione reductase (.1) Lus10011734 [exp] 143 / 1e-36 AT3G24170 863 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10000758 [exp] 120 / 7e-29 AT3G24170 776 / 0.0 glutathione-disulfide reductase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00070 [poplar] [flax] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase CL0063 [poplar] [flax] NADP_Rossmann PF01134 [poplar] [flax] GIDA Glucose inhibited division protein A CL0608 [poplar] [flax] Reductase_C PF02852 [poplar] [flax] Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.008G107600.1 pacid=42808446 polypeptide=Potri.008G107600.1.p locus=Potri.008G107600 ID=Potri.008G107600.1.v4.1 annot-version=v4.1 ATGCAATCCTCGCTCACTCTTTCGCTCTCTCAATCCGCGACAGCCTCAACCATTCCCAAATCAAACTACACACTTAATCACGCTCTCCGTTTTCCTCCTT CTAAGCTTATAAATCTCCGTTTCTGCGGTCTTAGAAGAGAAGCCTTTTTAGGTTCCTCCTCTCTCTCTCGCTCCCAATCTCTCCAAAATAAAACTCTCTC TAAGAAAATTAACAATGCAATCTCAGCTTCTTTATCTGGCAATGGAAGCGCACCAAAATCTTTTGATTATGATTTGATCATCATTGGTGCTGGTGTTGGG GGCCATGGTGCCGCACTTCACGCTGTTGAGAAGGGTTTGAAAACTGCTATCATTGAAGGGGATGTGGTAGGGGGGACATGTGTGAACAGAGGATGTGTTC CTTCAAAAGCACTTTTAGCTGTAAGTGGGCGGATGCGTGAACTACAGAGCGAGCATCACATGAAAGCTTTGGGTTTGCAGGTTGCAGCTGCTGGATATGA TAGACAAGGAGTGGCAGATCATGCTAATAATCTTGCTATGAAAATTCGTAATAATTTAACGAACTCAATGAAGGCCTTGGGTGTGGATATATTGACCGGT TTTGGCTCGATTTTGGGCCCACAAACAGTGCGATATGGGAAACTTGATGATTCTCCAGGCAACACAGTGACTGCTAAAGATATAATCGTTGCTACTGGTT CTGTCCCTTTTGTGCCCAAAGGCATCGAAGTTGATGGGAAGACTGTTATTACAAGTGACCATGCACTCAAACTGGAGTCTGTTCCTGATTGGATCGCAAT TGTAGGAAGTGGTTATATTGGTCTGGAATTCAGTGACGTGTATACTGCGCTTGGAAGTGAGGTCACCTTTATTGAAGCCCTCGATCAGCTCATGCCTGGA TTTGATCCTGAGATTGGAAAGTTGGCACAAAGGGTCCTAATTAATCCACGCAAAATTGACTATCATACCGGAGTATTTGCAACCAAGATCACTCCAGCTG AAAATGGGAAACCAGTCACCATTGAGCTTATTGATGCCAGGACCAAGGAACCCAAAGATACTCTGGAGGTAGATGCAGCATTAATTGCAACTGGAAGAGC TCCTTTCACAAAAGGTCTTGGCTTGGACAATGTCCAGGTAGCATTGAAAAATGGTTTTGTTCCTGTTGATGAGCGTATGCAAGTGCTTAATTTTGAGGGG AATCCGGTTCCTCACTTGTATTGCATTGGTGATGCTAATGGTAAAATGATGCTTGCTCATGCAGCCAGTGCACAAGGAATTTCAGTGGTTGAACAAATCA CTGGAAGGGATCACGTGCTGAATCATCTAAGCATTCCGGCAGCTTGTTTCACTCATCCTGAAATCAGTATGGTTGGATTGACAGAGCCTCAGGCAAGGGA GAAAGCTGAAAAGGAGGGTTTTGAAGTAAGTGTCACCAAGACGAGTTTCAAAGCCAACACAAAGGCCTTGGCAGAAAATGAAGGAGAAGGGATAGCTAAG TTGATATACAGACCTGACAATGGAGAGATACTTGGAGTGCATATTTTTGGGTTGCACGCTGCAGATCTCATCCATGAAGCATCCAATGCAATAGCTTTGG GCACTCGTATTCAGGACATAAAATTTGCAGTCCATGCACACCCAACTCTATCCGAAGTTCTCGATGAACTTTTCAAATCAGCAAAGGTTAAAGCTCATGT TCCAGGCCCAGTAAGTGAACCAGTTGCTGTTTGA
AA sequence Show only first row Show all	>Potri.008G107600.1 pacid=42808446 polypeptide=Potri.008G107600.1.p locus=Potri.008G107600 ID=Potri.008G107600.1.v4.1 annot-version=v4.1 MQSSLTLSLSQSATASTIPKSNYTLNHALRFPPSKLINLRFCGLRREAFLGSSSLSRSQSLQNKTLSKKINNAISASLSGNGSAPKSFDYDLIIIGAGVG GHGAALHAVEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVAAAGYDRQGVADHANNLAMKIRNNLTNSMKALGVDILTG FGSILGPQTVRYGKLDDSPGNTVTAKDIIVATGSVPFVPKGIEVDGKTVITSDHALKLESVPDWIAIVGSGYIGLEFSDVYTALGSEVTFIEALDQLMPG FDPEIGKLAQRVLINPRKIDYHTGVFATKITPAENGKPVTIELIDARTKEPKDTLEVDAALIATGRAPFTKGLGLDNVQVALKNGFVPVDERMQVLNFEG NPVPHLYCIGDANGKMMLAHAASAQGISVVEQITGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVTKTSFKANTKALAENEGEGIAK LIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKSAKVKAHVPGPVSEPVAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Potri.008G107600 [exp]	0	1
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Potri.009G084700 [exp]	6.16	0.7692
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Potri.018G146300 [exp]	8.48	0.7723	ACCC.1
AT4G23020			unknown protein		Potri.003G121100 [exp]	9.79	0.7247
AT1G10180			unknown protein		Potri.015G118500 [exp]	14.83	0.6819
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.002G052700 [exp]	24.39	0.6775
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Potri.010G091800 [exp]	24.97	0.6364
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Potri.011G071000 [exp]	26.58	0.6925
AT1G57820		ORTH2, VIM1	VARIANT IN METHYLATION 1, ORTH...		Potri.003G162400 [exp]	26.83	0.6854
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Potri.002G152300 [exp]	28.42	0.6069
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Potri.002G195800 [exp]	29.15	0.6852

Compare expression of checked genes

Potri.008G107600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.