Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16150 1026 / 0 CAMTA calmodulin binding;transcription regulators (.1) AT3G16940 968 / 0 CAMTA calmodulin binding;transcription regulators (.1) AT5G09410 354 / 8e-107 CAMTA CAMTA1, EICBP.B calmodulin-binding transcription activator 1, ethylene induced calmodulin binding protein (.1.2.3) AT2G22300 282 / 1e-80 CAMTA SR1, CAMTA3 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) AT1G67310 262 / 1e-73 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) AT5G64220 241 / 3e-66 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) AT5G14230 45 / 0.0003 unknown protein AT2G03430 43 / 0.0005 Ankyrin repeat family protein (.1) AT2G14255 44 / 0.0007 Ankyrin repeat family protein with DHHC zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141700 [exp] 1487 / 0 AT4G16150 1038 / 0.0 calmodulin binding;transcription regulators (.1) Potri.005G075100 [exp] 294 / 3e-84 AT2G22300 976 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.001G057800 [exp] 280 / 4e-80 AT1G67310 832 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.007G093400 [exp] 266 / 1e-74 AT2G22300 991 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.003G170600 [exp] 260 / 5e-73 AT1G67310 856 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.010G153100 [exp] 184 / 1e-47 AT5G64220 676 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.008G099733 [exp] 82 / 4e-19 AT5G64220 97 / 1e-25 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.004G210100 [exp] 50 / 7e-06 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1) Potri.004G210000 [exp] 50 / 7e-06 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037738 [exp] 1102 / 0 AT4G16150 1033 / 0.0 calmodulin binding;transcription regulators (.1) Lus10016873 [exp] 1037 / 0 AT3G16940 929 / 0.0 calmodulin binding;transcription regulators (.1) Lus10036455 [exp] 966 / 0 AT4G16150 845 / 0.0 calmodulin binding;transcription regulators (.1) Lus10041126 [exp] 538 / 5e-178 AT4G16150 430 / 1e-137 calmodulin binding;transcription regulators (.1) Lus10041704 [exp] 316 / 5e-93 AT2G22300 912 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10003405 [exp] 273 / 7e-77 AT5G64220 1028 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10036162 [exp] 274 / 1e-76 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10011352 [exp] 270 / 5e-76 AT1G67310 637 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10003119 [exp] 267 / 7e-76 AT1G67310 640 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10024044 [exp] 251 / 4e-70 AT2G22300 822 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0159 [poplar] [flax] E-set PF01833 [poplar] [flax] TIG IPT/TIG domain CL0159 [poplar] [flax] PF03859 [poplar] [flax] CG-1 CG-1 domain CL0465 [poplar] [flax] Ank PF13637 [poplar] [flax] Ank_4 Ankyrin repeats (many copies)
Representative CDS sequence Show only first row Show all	>Potri.008G107900.7 pacid=42806379 polypeptide=Potri.008G107900.7.p locus=Potri.008G107900 ID=Potri.008G107900.7.v4.1 annot-version=v4.1 ATGGAAAGTGGATTCTCGGACCGACTTGTAGGATCAGAGATTCATGGATTTCATACTCTTCGAGATTTGGATGTTCCAAACATAATGGAGGAATCTAGAA CAAGATGGCTCCGTCCAAATGAAATCCATGCAATGCTTTGCAATCACAAGTATTTCACCATCAATGTAAAGCCAGTAAAATTACCCATGAGTGGCACAAT TGTATTGTTTGACCGCAAGATGCTTAGGAACTTCCGAAAAGATGGTCATAACTGGAAGAAGAAAAAAGATGGGAAGACTGTTAAAGAAGCTCATGAACAC TTAAAAGTTGGTAATGAAGAGAGGATTCATGTATACTATGCACATGGCCAAGATATCCCGACCTTTGTTCGCAGGTGTTATTGGCTGCTAGACAAGACTT TGGAACATGTAGTGCTTGTTCACTACCGTGAGACCCAGGAGGGTTCTCCAGCCACACCTGTGAATTCACATTCTAGTTCAGTCTCTGATCAGTCTGCTCC CGGGCTTTTATCAGAAGAATCTGATTCTGGAGCTGCTCGTGGATATTATGCAGGCGAGAAAGATCTTGATTTATCAGGGCCCAGTGACAGCTTAACTGTC ATTAATCATGCAATCAGGCTTCATGAGCTTAATACACTTGAATGGGATGAGCTGTTGACAAATGATCCTGGCAATTCAATCTTGCATGGAGGAGATAAGA TTCCATCCTTTGACCAACAGAATCAGATTGCAGTTAAGGGGTCTGTTAACGATGGGAGCACTCTTTCAGGCTACCAATTATCAGCAGAAAAGTCTGCGTT TGGCAATTTAACTGAGGCTGTTGTTAGGAACGGTAACGCTCAGTTCAGTGGTCCAGATAATGTTTACAGACAGTTAACAGGTTCCCAAGTATATTTGGAT GCTCAGAGGAAGAATTCTGTTGTCCTGGGTGCTCGTGATTCATTGGATATTTTGATTAATGATGGTTTGCAAAGTCAGGATAGTTTTGGAAGGTGGATGA ATTCCATCATAGATGACTCTCCTGTTTCTGTAGATGATGCAACGGTTGAATCTCCGATTTCATCCGGTTATGATTCGTTTGCTTCTCCAGGAATGGATCA ACATCAATCTTCTATTCAAGAACAAATGTTTATCATAACTGATTTCTCACCTGCGTGGGGCTTTTCAAATGAAACAACCAAGATTCTAGTCACTGGATAT TTCCATGAACAGTATCTGCATCTGGCAAAGTCCAATCTGTTCTGTATCTGTGGAGATGCTTTTGTTCCAGCAGAAATTGTCCAGGCTGGGGTCTATAGCT GTATGGTGTCACCGCATTCCCCTGGACTAGTAAATCTATGTTTGAGTTTGGATGGATCCAAACCCATCAGCCAAATTTTGAATTTTGAGTACCGTGCTCC TTCAGTACATGATTCGGTTGTTTTTTCAGAAGACAAATCCAAGTGGGAAGAGTTCCATCTTCAGATGAGACTTGCTTATTTGCTCTTTTCTACTTCCAAG ACCCTTAATGTTCTATCTAGTAAAGTGTCACCGGCTAAACTGAAGGAGGCTAAGAAGTTTGCACACAAAACTTCTAATATTTCTAATAGTTGGGCATACT TGATTAAGTCAATTGAGGACAGCAGAATTTCAGTTGCACAAGCAAAAGATGGTTTGTTTGAACTTTCTTTAAAAAACACAATAAAGGAATGGCTATTGGA AAGAGTACTTGAGGGCTGTAAAACCACAGAATACGATGCTCAAGGCCTTGGAGTAATCCATTTATGTGCTATTATCGGTTACACTTGGGCAGTTTATTTG TTTTCATGGTCAGGCTTATCATTAGATTTTCGCGATAAACATGGATGGACAGCAATGCACTGGGCAGCATATTATGGAAGGGAGAAAATGGTTGCAGCTC TCTTATCTGCAGGGGCAAAGCCAAACTTGGTTACAGATCCCACTAAAGAAAATCCTGGTGGGTGCACCGCTGCTGATCTTGCATCTGCAAAGGGTTATGA TGGCTTAGCTGCGTATCTGTCTGAAAAGGCTTTGGTGGCACAATTTGAGTCTATGATAATAGCTGGAAATGCCTCTGGCTCGCTGCAAATGACTGCAACA GACACTGTAAATTCTGAGAATCTAAGTGAGGAGGAGTTGCATCTGAAGGATACTTTGGCAGCTTACCGCACAGCTGCTGATGCAGCAGCACGTATACAGA CTGCTTTCAGAGAACACTCGCTAAAAGTATACACTAAAGCAGTTCAGTTCTCCAGTCCAGAGGATGAAGCACGGAATATTATTGCAGCAATGAAGATCCA ACATGCCTTTCGCAACTATGACAGTAAGAAAAAGATTGCAGCTGCTGCCCACATTCAACATAGGTTCCATACTTGGAAAACGCGGAAGAATTTCCTTAAT ATGCGTCGACAGGCTATCAAAATTCAAGCTGCTTTCCGAGGCTTCCAAGAGAGAAGGCAGTACCGTAAGATCATCTGGTCAATTGGAGTGCTTGAGAAAG CAATTTTGAGATGGCGTTTAAAGAGAAAAGGCTTTCGAGGACTGCAAGTTGAACCTGTTGAAACAGATGTAGATCCGAAACATGAAAGTGATACGGAGGA AGACTTCTACAAAATCAGCCAGAAACAGGCGGGTGAACGTGTTGAGAGATCTGTAATACGGGTTCAAGCAATGTTCCGTTCAAAGCAAGCACAAGAGCAA TACCGGAGGATGAAATTAACCTATAACCAAGCAACTGTGGAATATGAAGGGCTTCTTGACACGGACATGGTTGAAAGTGACTTATAG
AA sequence Show only first row Show all	>Potri.008G107900.7 pacid=42806379 polypeptide=Potri.008G107900.7.p locus=Potri.008G107900 ID=Potri.008G107900.7.v4.1 annot-version=v4.1 MESGFSDRLVGSEIHGFHTLRDLDVPNIMEESRTRWLRPNEIHAMLCNHKYFTINVKPVKLPMSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEH LKVGNEERIHVYYAHGQDIPTFVRRCYWLLDKTLEHVVLVHYRETQEGSPATPVNSHSSSVSDQSAPGLLSEESDSGAARGYYAGEKDLDLSGPSDSLTV INHAIRLHELNTLEWDELLTNDPGNSILHGGDKIPSFDQQNQIAVKGSVNDGSTLSGYQLSAEKSAFGNLTEAVVRNGNAQFSGPDNVYRQLTGSQVYLD AQRKNSVVLGARDSLDILINDGLQSQDSFGRWMNSIIDDSPVSVDDATVESPISSGYDSFASPGMDQHQSSIQEQMFIITDFSPAWGFSNETTKILVTGY FHEQYLHLAKSNLFCICGDAFVPAEIVQAGVYSCMVSPHSPGLVNLCLSLDGSKPISQILNFEYRAPSVHDSVVFSEDKSKWEEFHLQMRLAYLLFSTSK TLNVLSSKVSPAKLKEAKKFAHKTSNISNSWAYLIKSIEDSRISVAQAKDGLFELSLKNTIKEWLLERVLEGCKTTEYDAQGLGVIHLCAIIGYTWAVYL FSWSGLSLDFRDKHGWTAMHWAAYYGREKMVAALLSAGAKPNLVTDPTKENPGGCTAADLASAKGYDGLAAYLSEKALVAQFESMIIAGNASGSLQMTAT DTVNSENLSEEELHLKDTLAAYRTAADAAARIQTAFREHSLKVYTKAVQFSSPEDEARNIIAAMKIQHAFRNYDSKKKIAAAAHIQHRFHTWKTRKNFLN MRRQAIKIQAAFRGFQERRQYRKIIWSIGVLEKAILRWRLKRKGFRGLQVEPVETDVDPKHESDTEEDFYKISQKQAGERVERSVIRVQAMFRSKQAQEQ YRRMKLTYNQATVEYEGLLDTDMVESDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16150	CAMTA		calmodulin binding;transcripti...		Potri.008G107900 [exp]	0	1
AT5G62570			Calmodulin binding protein-lik...		Potri.015G071800 [exp]	16.43	0.6557
AT3G14830			unknown protein		Potri.001G386700 [exp]	23.32	0.6452
AT5G49900			Beta-glucosidase, GBA2 type fa...		Potri.019G072800 [exp]	28.49	0.6230
AT5G36930			Disease resistance protein (TI...		Potri.011G077260 [exp]	30.13	0.6951
AT3G48330		ATPIMT1, PIMT1	Arabidopsis thaliana protein-l...		Potri.015G086600 [exp]	30.70	0.6337
AT3G56840			FAD-dependent oxidoreductase f...		Potri.006G026100 [exp]	32.61	0.5410
AT5G18470			Curculin-like (mannose-binding...		Potri.005G015300 [exp]	33.15	0.6612
AT4G27220			NB-ARC domain-containing disea...		Potri.018G137900 [exp]	33.76	0.5927
AT1G13340			Regulator of Vps4 activity in ...		Potri.010G127000 [exp]	34.05	0.6904
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Potri.007G006500 [exp]	42.70	0.6463

Compare expression of checked genes

Potri.008G107900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.