Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16910 904 / 0 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT1G20560 578 / 0 AAE1 acyl activating enzyme 1 (.1.2) AT2G17650 556 / 0 AMP-dependent synthetase and ligase family protein (.1) AT5G16340 515 / 1e-178 AMP-dependent synthetase and ligase family protein (.1) AT5G16370 515 / 2e-178 AAE5 acyl activating enzyme 5 (.1) AT1G21530 512 / 2e-177 AMP-dependent synthetase and ligase family protein (.1.2) AT1G65880 508 / 2e-175 BZO1 benzoyloxyglucosinolate 1 (.1) AT1G66120 504 / 1e-173 AMP-dependent synthetase and ligase family protein (.1) AT1G65890 503 / 1e-173 AAE12 acyl activating enzyme 12 (.1) AT1G21540 502 / 2e-173 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010600 [exp] 597 / 0 AT1G20560 823 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G250700 [exp] 597 / 0 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G099500 [exp] 570 / 0 AT2G17650 800 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G138350 [exp] 553 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.004G082000 [exp] 550 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.017G138451 [exp] 547 / 0 AT1G65880 730 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.016G034800 [exp] 540 / 0 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G036200 [exp] 534 / 0 AT1G66120 668 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G036300 [exp] 533 / 0 AT1G66120 687 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016870 [exp] 944 / 0 AT3G16910 918 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037735 [exp] 937 / 0 AT3G16910 909 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037734 [exp] 923 / 0 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016869 [exp] 922 / 0 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016011 [exp] 581 / 0 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10028375 [exp] 560 / 0 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10007369 [exp] 558 / 0 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10020787 [exp] 554 / 0 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10010956 [exp] 538 / 0 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1) Lus10039161 [exp] 511 / 8e-177 AT5G16370 781 / 0.0 acyl activating enzyme 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G108000.5 pacid=42806257 polypeptide=Potri.008G108000.5.p locus=Potri.008G108000 ID=Potri.008G108000.5.v4.1 annot-version=v4.1 ATGGGGAAGACGAGAGATATCGATGATCTACCAAAAAACCCAGCAAACTACATGTCTTTGACCCCACTATGGTTCCTGGAGAGAGCTGCCACTGTACACC CTACAAGAACATCTATTGTCCATGAATCAGTACAGTACACGTGGCAAGAAACTTACCAACGTTGCTGCCGATTTGCTTCTGCTCTGTCCAACCGCTCTCT TGGCCTTGGTCGCACGGTGGCTGTAATTGCACCTAATGTCCCTGCTTTATATGAAGCACATTTTGGAGTTCCAATGGCAGGAGCTGTTGTAAACTGCGTT AATATTCGTTTAAATGCTCAAGCTATTGCTTTTCTTCTAGGTCATTCAAAATCTGAAGTTGTGATGGTGGACCAAGAGTTTTTCACTCTGGTGGAGGAAG CTTTAAAAATCTGGGAAGGTAACGAAAAGAATTTTAAACCTCCACTATTGGTTGTCATAGGTGATAAAAGCTGCGATCCAAAGTCTCTGGAATATGCTTT AGGAAGAGGAGCCATTGAATATGAGAAGTTCCTTGAAAGTGGTGACCCTGAGTTTGATTGGAAACCACCTGAGGATGAGTGGCAGAGCATTGCCTTGGGT TATACTTCTGGTACAACCTCCAGCCCCAAAGGAGTGGTGCTGAGCCACCGTGGAGCATATCTCATGTGCTTGAGTAATCCTGTTATTTGGGGGATGGATG AAGGGGCTATTTATCTGTGGACTCTGCCGATGTTCCATTGCAATGGTTGGTGTTTTACTTGGACACTTGCAGCCCTTTGTGTGAAAAGTATATGCCTTCG ACAGGTAACAGCTAAGGCAATCTATTCAGCCATAGCATATGCCGGCGTCAGTCACTTCTGTGCTGCACCTGTGGTACTTAACACCATAATCAATGCTTCA AAGGAGGAGACTATCCTTCCTCTACCCCGTTTGGTTCACGTAATGACAGCTGGTGCTGCCCCTCCCCCTTCTGTACTCTTCTCTATGTCAGAAAAAGGCT TCCGCGTGACACACACCTATGGACTCTCAGAAACTTATGGCCCCTCCACAGTGTGTGCATGGAAGCCTGAGTGGGACTCGCTTCCCCCAATAAAACAAGC CCGTCTCAATGCTCGCCAAGGTGTTCGATATGTTGGCTTGGAGAGGCTAGATGTTGTTGACACTAAAACCATGAAACCTGTCCCTGCAGATGGAAAAACC ATGGGAGAAATCGTGATGAGAGGCAATGTTGTGATGAAGGGCTACTTAAAGAACCCAAAAGCCAACGAGGAAGCTTTTGCAAATGGATGGTTTCATTCCG GGGATCTTGGTGTAAAGAATCCTGATGGATATATAGAAATTAAGGATAGATCAAAGGACATTATCATCTCTGGAGGTGAAAACATAAGTAGCTTGGAGGT GGAAAACGTATTGTACATGCACCCAGCTATCTATGAGGTATCGGTGGTAGCTCGACTACATGAGCGCTGGGGCGAGTCACCGTGTGCTTTTGTGACTTTG AAACCTGAAATGGAAAAATCTGATAAACAACAATTGATTGATGATATAATGAAGTTTTCTCGGTCAAATATGCCTGCTTACTGGGTTCCAAGATCAATAG TGTTCGGGCCTCTGCCAAAAACAGCGACGGGGAAGATTCAGAAACATGTCCTCAGGGCCAAGGCAAGAGAGATGGGACCTATCAAGGAGAGTAAGTTATA G
AA sequence Show only first row Show all	>Potri.008G108000.5 pacid=42806257 polypeptide=Potri.008G108000.5.p locus=Potri.008G108000 ID=Potri.008G108000.5.v4.1 annot-version=v4.1 MGKTRDIDDLPKNPANYMSLTPLWFLERAATVHPTRTSIVHESVQYTWQETYQRCCRFASALSNRSLGLGRTVAVIAPNVPALYEAHFGVPMAGAVVNCV NIRLNAQAIAFLLGHSKSEVVMVDQEFFTLVEEALKIWEGNEKNFKPPLLVVIGDKSCDPKSLEYALGRGAIEYEKFLESGDPEFDWKPPEDEWQSIALG YTSGTTSSPKGVVLSHRGAYLMCLSNPVIWGMDEGAIYLWTLPMFHCNGWCFTWTLAALCVKSICLRQVTAKAIYSAIAYAGVSHFCAAPVVLNTIINAS KEETILPLPRLVHVMTAGAAPPPSVLFSMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSLPPIKQARLNARQGVRYVGLERLDVVDTKTMKPVPADGKT MGEIVMRGNVVMKGYLKNPKANEEAFANGWFHSGDLGVKNPDGYIEIKDRSKDIIISGGENISSLEVENVLYMHPAIYEVSVVARLHERWGESPCAFVTL KPEMEKSDKQQLIDDIMKFSRSNMPAYWVPRSIVFGPLPKTATGKIQKHVLRAKAREMGPIKESKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Potri.008G108000 [exp]	0	1
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.014G019600 [exp]	1.00	0.8859
AT2G44410			RING/U-box superfamily protein...		Potri.001G229600 [exp]	1.41	0.8805
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Potri.005G070500 [exp]	2.44	0.8717
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Potri.001G132500 [exp]	3.46	0.8766
AT2G38920			SPX (SYG1/Pho81/XPR1) domain-c...		Potri.006G198600 [exp]	7.00	0.8177
AT2G44410			RING/U-box superfamily protein...		Potri.009G023300 [exp]	7.07	0.8758
AT1G62600			Flavin-binding monooxygenase f...		Potri.001G121100 [exp]	10.95	0.8424
AT3G02910			AIG2-like (avirulence induced ...		Potri.019G041100 [exp]	11.83	0.8603
AT4G35220			Cyclase family protein (.1)		Potri.001G301501 [exp]	15.58	0.8566
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Potri.015G078900 [exp]	16.12	0.8389	PtrcGrx_C1.1

Compare expression of checked genes

Potri.008G108000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.