Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16890 770 / 0 PPR40 pentatricopeptide (PPR) domain protein 40 (.1) AT5G39710 238 / 3e-68 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 223 / 1e-63 RPF2 rna processing factor 2 (.1) AT5G65560 226 / 1e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 217 / 2e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 216 / 7e-61 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 216 / 5e-60 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 211 / 2e-59 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 211 / 4e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 201 / 2e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G049400 [exp] 260 / 2e-75 AT1G79540 787 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 240 / 2e-69 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 239 / 8e-69 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 232 / 4e-67 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G069600 [exp] 234 / 5e-67 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 228 / 1e-65 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G015900 [exp] 229 / 4e-65 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271200 [exp] 226 / 5e-65 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 225 / 2e-64 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043104 [exp] 820 / 0 AT3G16890 720 / 0.0 pentatricopeptide (PPR) domain protein 40 (.1) Lus10032647 [exp] 523 / 0 AT3G16890 464 / 1e-159 pentatricopeptide (PPR) domain protein 40 (.1) Lus10032648 [exp] 255 / 4e-80 AT3G16890 225 / 1e-69 pentatricopeptide (PPR) domain protein 40 (.1) Lus10039056 [exp] 233 / 4e-66 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 224 / 1e-62 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 220 / 2e-61 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 216 / 5e-60 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 219 / 6e-60 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 215 / 8e-60 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 214 / 1e-59 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.008G108300.1 pacid=42806954 polypeptide=Potri.008G108300.1.p locus=Potri.008G108300 ID=Potri.008G108300.1.v4.1 annot-version=v4.1 ATGAGAGGGCTTTCTTTAGCTTCTAGGGCATCATCACCTGCACTCAATAACCTCTCTAAATCTCAAAAATCATCCAATCAGCCAAAACTCACCACGCAGA AGCACCCCTCAAAGTCCAAAACTGATCGATTTCAAAGGCAAACCAACCACACTGAAGCTTCTTTAACAGGTAATAATACTCTTTCTTCACTAAACTCTCA ACTTACAAAACCCAACTTATTATCAGTCCCAAAAGGTCATGTTTCACATAACAGAGATACCAGGTCAGTTGATCGTCATTATATTTCTAGAATTCTGTCA AGAAATGACTGGTTTTTACTGCTAAACCACGAGTTTAAGGCGAAGAGGATTAATTTGAATCCTCAGTTTGTAGTTAGTGTTTTGCAAAATCAAGAAAACC CAATATACCCGTTGAGATTTTATATCTGGGTTTCGAATGTTGACCCGTTATTTATTAGGAATCAGGCTGTTAAGGGTGTTTTAGCTAATGCGTTTTATCG AAAAGGTCCTGTTGTATTGTCTGTTGATTTGCTTAAAGATATTAGAAACTCAGGTTTTCGAGTTGACGAAGATTTGCTTTGCGTTTTGATTGGTAGTTGG GGAAGGTTAGGATTGGCAAAGTATTGTGAGGAAATATTTGGACAAATATCTTTTTTGGGTATTACTCCTAGTACAAGGTTGTATAATGCTGTTATTGATG CATTGGTGAAATCAAACTCTCTTGACCTTGCCTATTTGAAGTTTCAACAGATGTCAGCGGATAATTGTAAACCTGACAGGTTTACTTATAACATGCTTAT TCATGGAGTTTGTAAAATTGGTGTGGTGGATGAGGCACTTCGGTTGGTTAAGCAGATGGAAGGTTTTGGATATTCAGCTAATGTTTATACATACACTAAC TTAATATATGGGTTTTGCAATGCAAAGAGGGTTGATGAAGCATTCAGGGTTTTTGAAACAATGAAGCTTCGGAATGTCAATCCTAATGAAGCCACTATCA GATCATTGGTTCATGGGGTGTTTCGTTGTGTGGCTCCACGTGAGGCGTTTGAACTGGTGATAGATTTTATTGAAAAGGAGCCTGTTTTGGGGAGATTGGC TTGTGATACTTTACTCTGTTGCCTGTCAGAGAAGTGTATGCCAAGAGAGGCAGGTGCATTATTGAGGAAACTTGGGGAGAGAGGTTATTTGCCTGACAGT TCGACATTTAACATCACAATGACTTGTTTGTTAAAGGGTTTGGATGTCAATGAGACATGTGGGATATTGGATAAATTTATTGCGCGGGGTGCGAAGTTGG GGTTTAGCTTTTATCTTGCATTAATTGAAACTTTGTATAAAGCAGGAAGAGGTATGGAGGGAGATCGGTATTTGAATCAAATGGTCAAGGACAGACTTGT GTCTGATGTCTTTTCATATAACATGCTAATTGATTGCTTCTGCAAAGCCAATGTGATGAACAAGGCAGTAATGGTTTTCAAAGTGATGCAAGATAGAGGT GTTTCTCCCAACCTTGTTACTTTCAATACCCTTATTAGTGGCCACTGCAAAGATGGAGAGGTGCATAAAGCACGTGAACTGTTGCAGATGCTTTTAGAAC TTGGATTGAAGCCAGATATTTTCACTTTTAGTTCAATAATTGACTGTCTTTGTCGAGCACAACAGTTTGATGATGCTTTAGGTTGTTTCAGTGAAATGGT GGAATGGGGTATCTCTCCTAATGCTGTCACGTACAATATATTGATTCGTTCTCTGTGTCTTATAGGAGATGTTGGTAGATCAATGAAACTCTTAAAAGAC ATGCGAAAGGATGGAATAAGCCCTGATATTTTCTCCTTCAATGCTCTCATTCAAAGTTTTTGTAGGATGGGAAAAGTTGAGAAAGCAGAGAAGATGTTTG TTTCCATGTCTACCTTGGGCTTGATTCCCAACAACTATACTTATGGTGCTCTTGTTAAGGCATTGTTTGAATTAGGGAGATGTGATGAAGCTAAGAAGAT GTTTTTTTCAATGGAAGTGAATGGCTGTGTTCCTGATTCCTTCACATGCAATTTGATTTCAGAAAATCTGTTTAAGCAAGGCGATTTTGAAGAGCTTCAA AATATAGCAAAAATATGTTCTGAGAGAGGAATTGCTCTAAAATCCATTCCTGCAGTGTAG
AA sequence Show only first row Show all	>Potri.008G108300.1 pacid=42806954 polypeptide=Potri.008G108300.1.p locus=Potri.008G108300 ID=Potri.008G108300.1.v4.1 annot-version=v4.1 MRGLSLASRASSPALNNLSKSQKSSNQPKLTTQKHPSKSKTDRFQRQTNHTEASLTGNNTLSSLNSQLTKPNLLSVPKGHVSHNRDTRSVDRHYISRILS RNDWFLLLNHEFKAKRINLNPQFVVSVLQNQENPIYPLRFYIWVSNVDPLFIRNQAVKGVLANAFYRKGPVVLSVDLLKDIRNSGFRVDEDLLCVLIGSW GRLGLAKYCEEIFGQISFLGITPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNMLIHGVCKIGVVDEALRLVKQMEGFGYSANVYTYTN LIYGFCNAKRVDEAFRVFETMKLRNVNPNEATIRSLVHGVFRCVAPREAFELVIDFIEKEPVLGRLACDTLLCCLSEKCMPREAGALLRKLGERGYLPDS STFNITMTCLLKGLDVNETCGILDKFIARGAKLGFSFYLALIETLYKAGRGMEGDRYLNQMVKDRLVSDVFSYNMLIDCFCKANVMNKAVMVFKVMQDRG VSPNLVTFNTLISGHCKDGEVHKARELLQMLLELGLKPDIFTFSSIIDCLCRAQQFDDALGCFSEMVEWGISPNAVTYNILIRSLCLIGDVGRSMKLLKD MRKDGISPDIFSFNALIQSFCRMGKVEKAEKMFVSMSTLGLIPNNYTYGALVKALFELGRCDEAKKMFFSMEVNGCVPDSFTCNLISENLFKQGDFEELQ NIAKICSERGIALKSIPAV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Potri.008G108300 [exp]	0	1
AT3G02065			P-loop containing nucleoside t...		Potri.003G110600 [exp]	2.00	0.8427
AT4G10710		SPT16	global transcription factor C ...		Potri.013G004500 [exp]	4.24	0.8683	GTC903
AT4G31430			unknown protein		Potri.006G275200 [exp]	4.24	0.8444
AT5G48340			unknown protein		Potri.014G174300 [exp]	4.58	0.8219
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Potri.013G020500 [exp]	8.48	0.8490
AT1G10280			Core-2/I-branching beta-1,6-N-...		Potri.003G001700 [exp]	10.53	0.7809
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Potri.002G189700 [exp]	16.91	0.7893
AT1G03910			unknown protein		Potri.006G118700 [exp]	17.43	0.8209
AT1G18950			DDT domain superfamily (.1)		Potri.012G072200 [exp]	19.28	0.8251
AT5G25520			SPOC domain / Transcription el...		Potri.018G034500 [exp]	20.00	0.8097

Compare expression of checked genes

Potri.008G108300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.