Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49350 139 / 7e-41 Glycine-rich protein family (.1.2) AT1G56320 112 / 3e-31 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G019200 [exp] 130 / 4e-38 AT1G56320 130 / 4e-39 unknown protein Potri.010G141201 [exp] 56 / 2e-09 AT3G16890 57 / 2e-09 pentatricopeptide (PPR) domain protein 40 (.1) Potri.013G158300 [exp] 43 / 3e-05 AT5G49350 44 / 1e-05 Glycine-rich protein family (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016857 [exp] 160 / 4e-49 AT5G49350 138 / 3e-40 Glycine-rich protein family (.1.2) Lus10037727 [exp] 162 / 1e-48 AT5G49350 136 / 1e-38 Glycine-rich protein family (.1.2) Lus10041125 [exp] 95 / 7e-24 AT5G49350 99 / 2e-25 Glycine-rich protein family (.1.2) Lus10031407 [exp] 81 / 1e-18 ND 85 / 1e-20 Lus10010927 [exp] 74 / 3e-15 AT1G56140 343 / 2e-107 Leucine-rich repeat transmembrane protein kinase (.1) Lus10019112 [exp] 40 / 0.0003 ND 40 / 2e-04 Lus10034447 [exp] 39 / 0.001 AT5G49350 41 / 9e-05 Glycine-rich protein family (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G108400.1 pacid=42807687 polypeptide=Potri.008G108400.1.p locus=Potri.008G108400 ID=Potri.008G108400.1.v4.1 annot-version=v4.1 ATGGCACAATATGCAATCACATTTAGACTCTGGGTTTTATCTGCAGTTCTTGTTGGGGTCTCTATATTCTGCTGCAACCTAGGGAAGGCAGATGAAGGTG AAGATGTGCCTCAAACAGGCACAGGAATTATAGGTGGTGTGCCTCAAACAGGCACTGGTACTATTGGTGGCGTCCCTCAAACAGGCACAGGCACTGGCAC TATTGGTGGTGTTCCTCAAACAGGCACAGGCACAGGCATCGTAGATGCTGATCCGGCTGAAATTGTTGCCAAAGCGTTGCTTTGTTTCAGCGATAAATAT TTATACAGCAGCTGCGAAGTAGCCTATAGATTGACCCAGACAGGTAAGCTTAACGTGCCTCCTGAATACGCTGATTCCTACTGCGGTGGACCATGCCTTG TAGAGACACATTTGGTGCTCAGCTGCATTGAAAACATCATGAAACATTTTGTTTTCTATAATAAAGCCACCATAGAGGATATCAGAGACACAATCAAGGC CGGATGTGGCTACGGTCCCGAGAGAGGTAATTTTGATGTGTCCGAGCACCTTCAATTTGAAGAAAACAATGCATTCAAGACTGCAAACCAGATTCTGCTC GGAGTTGGCTTCATGTTCGGCGGGCATGCTTTATTGCTTTGA
AA sequence Show only first row Show all	>Potri.008G108400.1 pacid=42807687 polypeptide=Potri.008G108400.1.p locus=Potri.008G108400 ID=Potri.008G108400.1.v4.1 annot-version=v4.1 MAQYAITFRLWVLSAVLVGVSIFCCNLGKADEGEDVPQTGTGIIGGVPQTGTGTIGGVPQTGTGTGTIGGVPQTGTGTGIVDADPAEIVAKALLCFSDKY LYSSCEVAYRLTQTGKLNVPPEYADSYCGGPCLVETHLVLSCIENIMKHFVFYNKATIEDIRDTIKAGCGYGPERGNFDVSEHLQFEENNAFKTANQILL GVGFMFGGHALLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49350			Glycine-rich protein family (....		Potri.008G108400 [exp]	0	1
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Potri.007G072100 [exp]	1.73	0.9814
AT4G20390			Uncharacterised protein family...		Potri.011G154900 [exp]	4.00	0.9747
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Potri.005G092200 [exp]	4.24	0.9743
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G056450 [exp]	4.69	0.9576
AT5G44550			Uncharacterised protein family...		Potri.001G442300 [exp]	4.89	0.9669
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G056400 [exp]	7.21	0.9493
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.007G100700 [exp]	7.41	0.9625
AT5G58750			NAD(P)-binding Rossmann-fold s...		Potri.009G045700 [exp]	7.74	0.9473
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.011G145000 [exp]	7.74	0.9578	Pt-HMGR3.2
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.018G095900 [exp]	8.94	0.9616

Compare expression of checked genes

Potri.008G108400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.