Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49340 469 / 3e-163 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT3G12060 422 / 3e-143 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G06700 420 / 7e-142 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT1G60790 389 / 2e-130 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G20590 371 / 2e-124 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G62390 325 / 8e-107 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G19160 295 / 4e-95 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G06080 291 / 2e-93 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G11570 257 / 6e-81 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT5G06230 254 / 2e-80 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T171301 [exp] 827 / 0 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.006G193900 [exp] 421 / 3e-142 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 411 / 3e-138 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.001G010900 [exp] 405 / 1e-136 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.010G043300 [exp] 394 / 2e-132 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.006G071500 [exp] 370 / 5e-124 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.018G133000 [exp] 369 / 2e-123 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.002G195800 [exp] 330 / 9e-108 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.009G072800 [exp] 283 / 1e-91 AT5G58600 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037726 [exp] 430 / 8e-148 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Lus10021066 [exp] 416 / 3e-140 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10013035 [exp] 394 / 1e-132 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10029126 [exp] 376 / 8e-126 AT1G60790 527 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10011932 [exp] 366 / 1e-122 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 362 / 4e-121 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10004159 [exp] 327 / 5e-106 AT5G06700 552 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10002430 [exp] 320 / 3e-104 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10034041 [exp] 298 / 4e-96 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10034039 [exp] 287 / 3e-92 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.008G108500.1 pacid=42807322 polypeptide=Potri.008G108500.1.p locus=Potri.008G108500 ID=Potri.008G108500.1.v4.1 annot-version=v4.1 ATGGCACCTTTCAAGAACCTTTTCACCACTTCCATTAACATCTCAAGAACCCTATCTTTCCCTTTACCAAGATCAAGAACCCACCGTTTAGCCATTGCCC TTCTCCTTCTTTCGTTATTCTTCTTCTCCTCTACATCACTAACCAACCAATTGCCGTCTTTTTTAACTGCATCTTCTCTTGCTTCTAGCATTCTTTTTGC AGCAAACTATATTTCTCCATTCTCTTCAATCACATCTTCAAGAACATGTTTAGTCTCTGACTCAACCGATAACTGCACACTCTCTTCTGTTACTGCAATA GAAAGAACTCGCATGAATCCAAGAAAAGAAGAAGAAATTGATGATGTTATTGCAGGCCTTAGTTCTTGCGATATATTTAATGGGAATTGGGTTCTTGATG ATTCTGATCCTATTTACCAACCTGGGTCTTGCCCTTTTTTAGATGATGCCTTCAACTGTTTCAATAACGGAAGGCCTGACTTGGACTATCTTCGATATCG ATGGAAACCTCATGGATGCCAAATTCCAAGGTTTGATGGGAGACAGATGTTGCGAATGTTGAGAGGGAAGAGAATGGTGTTTGTGGGGGACTCGTTGAAT AGGAATATGTGGCAATCTTTGGTATGTGCATTGAGAGAATCAGTGGAGAATAAGAGCAGAATCTTTGAAATTGAGGGTCGGCGAGAGTTCAGGGCTAGAG GCTTCTACTCTTTCAACTTCGTAGATCATAATTGCTCAATAGACTTTGTAAAATCGCCATTCCTTGTTCAAGAATGGCGAAGCTCAGACAGGCGTGGAAA TCGAAGAGAAAGACTCAGGCTTGACATGATCCAAACCCCTTCTTTCAATTACCATGATGCTGATATAATCATCTTCAACACCGGTCACTGGTGGACGCAC CAGAAAACATACAGAGGCAAAAATTACTTCCAAGAAGGCAGGAAAGTCTATAACAGGCTAGAAGTAAATGAAGCTTATAAGAAAGCTTTATGGACATGGG CAAAATGGGTTGATTCTAACATCAACAGAAGCCATACCAGGGTCTTCTTCGGTGGATACTCAGCTTCTCACTTCAGGAAAGGGAAATGGGATTCAGGTGG GCATTGTCATGAAGAGAGGCAGCCTGTAACAAACGACACTCTACTTAAACCATATCCATTGATGATGAAGATTCTCGAATCTGTTATATCAGAGATGAAG ACGCCAGTTTTTTACCTCAACATTACCAGAATGACAGGGTACAGAAAAGATGGGCATCCTTCGGTTTACCGGAAACCTAATGTCCATCAAAGAATTCCTG GGATTATCCAAGATTGCAGCCATTGGTGTCTTCCCGGTGTTCCAGACTCCTGGAATGAGCTTTTCTACGCCACTTACCTTTTATCACATCATGCTTTGTC AAGCAACCACTAG
AA sequence Show only first row Show all	>Potri.008G108500.1 pacid=42807322 polypeptide=Potri.008G108500.1.p locus=Potri.008G108500 ID=Potri.008G108500.1.v4.1 annot-version=v4.1 MAPFKNLFTTSINISRTLSFPLPRSRTHRLAIALLLLSLFFFSSTSLTNQLPSFLTASSLASSILFAANYISPFSSITSSRTCLVSDSTDNCTLSSVTAI ERTRMNPRKEEEIDDVIAGLSSCDIFNGNWVLDDSDPIYQPGSCPFLDDAFNCFNNGRPDLDYLRYRWKPHGCQIPRFDGRQMLRMLRGKRMVFVGDSLN RNMWQSLVCALRESVENKSRIFEIEGRREFRARGFYSFNFVDHNCSIDFVKSPFLVQEWRSSDRRGNRRERLRLDMIQTPSFNYHDADIIIFNTGHWWTH QKTYRGKNYFQEGRKVYNRLEVNEAYKKALWTWAKWVDSNINRSHTRVFFGGYSASHFRKGKWDSGGHCHEERQPVTNDTLLKPYPLMMKILESVISEMK TPVFYLNITRMTGYRKDGHPSVYRKPNVHQRIPGIIQDCSHWCLPGVPDSWNELFYATYLLSHHALSSNH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Potri.008G108500 [exp]	0	1
AT1G69630			F-box/RNI-like superfamily pro...		Potri.013G146800 [exp]	5.83	0.6852
AT3G24650	B3	SIS10, ABI3	SUGAR INSENSITIVE 10, ABSCISIC...		Potri.002G252000 [exp]	10.00	0.6229	ABI3.1
					Potri.016G115250 [exp]	12.00	0.6025
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Potri.010G225000 [exp]	17.14	0.5325
AT2G46570		LAC6	laccase 6 (.1)		Potri.014G100600 [exp]	22.69	0.6287
AT5G66390			Peroxidase superfamily protein...		Potri.007G019300 [exp]	23.36	0.6284
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Potri.010G044500 [exp]	24.10	0.6275
AT1G68510	AS2	LBD42	LOB domain-containing protein ...		Potri.008G120600 [exp]	24.18	0.6233
AT1G15120			Ubiquinol-cytochrome C reducta...		Potri.002G069301 [exp]	24.39	0.5673
AT2G17950	HD	WUS1, PGA6, WUS	WUSCHEL 1, WUSCHEL, Homeodomai...		Potri.007G012100 [exp]	27.74	0.6092

Compare expression of checked genes

Potri.008G108500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.