Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58650 234 / 8e-65 unknown protein AT5G26910 189 / 2e-50 unknown protein AT3G05750 178 / 4e-46 unknown protein AT1G67040 87 / 5e-17 unknown protein AT1G74160 46 / 0.0002 unknown protein AT1G18620 46 / 0.0002 unknown protein AT5G51850 44 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T171201 [exp] 1803 / 0 AT3G58650 235 / 3e-65 unknown protein Potri.010G140900 [exp] 1477 / 0 AT3G58650 235 / 4e-65 unknown protein Potri.005G019700 [exp] 578 / 0 AT5G26910 417 / 4e-132 unknown protein Potri.013G010500 [exp] 517 / 2e-169 AT5G26910 371 / 6e-115 unknown protein Potri.017G116000 [exp] 97 / 3e-20 AT1G67040 317 / 3e-94 unknown protein Potri.004G098300 [exp] 93 / 5e-19 AT1G67040 339 / 2e-102 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037725 [exp] 823 / 0 AT5G26910 276 / 4e-80 unknown protein Lus10029857 [exp] 349 / 3e-106 AT3G58650 345 / 2e-105 unknown protein Lus10016854 [exp] 259 / 5e-77 AT3G58650 134 / 2e-33 unknown protein Lus10020689 [exp] 167 / 2e-42 AT5G26910 350 / 2e-107 unknown protein Lus10017607 [exp] 67 / 5e-11 AT1G67040 179 / 7e-47 unknown protein Lus10033565 [exp] 66 / 1e-10 AT1G67040 236 / 3e-66 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14309 [poplar] [flax] DUF4378 Domain of unknown function (DUF4378) PF14383 [poplar] [flax] VARLMGL DUF761-associated sequence motif
Representative CDS sequence Show only first row Show all	>Potri.008G108600.1 pacid=42807786 polypeptide=Potri.008G108600.1.p locus=Potri.008G108600 ID=Potri.008G108600.1.v4.1 annot-version=v4.1 ATGGGAATTGAGAAAGAAGGTTCTAAAAGTGGAGGATACGTGGGTGGTTTTTTTCAGTTGTTTGATTGGACTGCAAAATCTAGGAAAAAGTTGTTTTCAA GCAAGTCAGATTTACCAGAACGTTCAAAACAAGGAAAGAGAAGTGATGGGAGCTTGCCAATGACTCGGCTTCATCTGATGGATGATGATGAAAATGGAGC AGGGTCGGGTATTAGAGGGGGCAGTGATTATAGCTGTGCTTCATCGGTAACTGATGATGATGGATATGGAGCTAGGGCCCCTGGGGTAGTAGCCAGGCTC ATGGGATTGGACTCCATGCCAACATCTAATTTATCAGAGCCCAATTCTACACCTTCTTTTGACACTCAATCTCTTCGAGATGCTTCTCGTGGCAGTAGAA ATTTTGATTACTACCAGGATCATCAAATCGCATACTCAGGAAATCTGCTTGACAAGGAGGATCGCCCTCCTAGAAACTTCGAGGAGTCTAAGTCTCATAA GGTCCTGAGCAGGCCTATTGAAAAGTTTCAAACTGAAATCCTGCCTCCTAAGTCGGCCAAATCGATTCCAATTACCCACCATAAACTTTTATCTCCAATC AAGAGTCCTGGTTTCATTCCGAACAAAACTGCTGCTCACATAATGGAAGCAGCTGCAAAAATTATTGAGCCGGGTCCCCAAGCAGCAGCCAAACCCAAAA TGCCTGCTGTTGGGTCTTCTTCAGTACCACTGAAAGTTCGGGATCTTAAAGAAAAACTGGAGGTTGCTCAGAAAATGCCTCTGGCTGGGTCCTCTTCAGC AGCCTTGAGAACTCGAGAACCAAAAGAGAAAGTGGAAGTTTCTCATAAAACTTTGAGACTTGCAGAAACTTCTCGAAGACCAGTTGAGTCAAATGCTGCC AAGCATCTAAAGGGGCAGTCTTTGAACAAAAGCTGGAATGGATCAGATGATACATCTTGCAGGGCTTTTTCTGAGACTGATGAAGGTTCTTCTAGTTCAA AGACTAAGGGAAAGTCTATCTCACTTGCAATCCAAGCAAAGGTCAATGTTCAGAGAAGAGAAGGTTTGAATTCAAGTAGCCGTCAAGGCTTTGTAGGCCA GAAAGAACTGAGAGAGGTTTCATCAAGCCAGTCCTTCAAGTGCCAACCTAATGTCCAAAAGAGTTTGCAAAAAAGATCTCCAGTACAGAATACATCTGGT GTGCTTAGGCAGAATAACCAGAAACAAAATTGCATAATGGATAAAGACAAATTGCCTTCAAAGCCCTTGGTTTCCAAACTGCAGGGTAAAAGAGTTCTGT CTGGGAATCCTCCTGTGAGGCACAAAACTTCTGGTAAGCCTTTTGGCTCCAAAAATGGATCTAGGAAGCTGGACTTGGATTTGAGAGAAGGCGAGAAGGG GAATTCTAACTATAGTATGGCGAATAATCCCAGGAAGAAGCGATCAATTGATGGAAATTTGCATGTTGAGAAAAACCAGGTTGTTGATAACAAGCTGATT GACAGAAATCGGAAGGCTGTTGAACCTACTCCAGTTATTGACAGGCCCTTTAGTTGGGCAGAAGAAAGCAAAAGGAAAGGCATGGATGTTGTCTCGTTTA CATTCACAGCCCCCTTGACACGGTCTATGCCTGGTTCAGAAACACCTACTCAGGCTGTACAGAAAAATAGTGGTTCTTGTATGGATAATTGTAGCAAGAG ATTGTTGCTTGACACAGATAGTATGAAGCTATCTTCAGTGGGATATAATGTGATTGGAGGGGATGCTTTGAGTTCTCTTTTGGAACAAAAGTTAAGGGAA TTGACTAAAGGTGTCGAGTCCTCTAGTTCTATATCCACTTTTAGTTCAGGCGGCGCTGCACCAAGGTTACATGATAACAAGGATCAAAGTTTCTCGTGCA TAGATAAATCAGATAGCTGCTATGATTCTCCCTCGGCCTTATTCTTCACTGATCCTGCAGCTCTCAGATTGAAACACACTTTTCAGGGAGTTGATGAGAT GGACTGTAGCAGCAAATCAAATGATTCCAGACAGCTGCTTGATTGTAGACGTCCTAGTCCAGTCTCTGTTCTTGAACATTCTTTTTCAACTGAAAGTAGC AGCTCTTTGGACAGTATGGATAGTTGCAGCACAGAAGGGAACAAGCATTGTTCATCCATTCAAACCCAGGAAGTTCTTAGTTTGAGCTCTACAAAGAGGG TTCATTTTGTTGATGCTGACATGGAGTTATCAGATTCTGCTTCTTCAACATCAACTGGAACAGTGGCTAGAAAACATTCAATCATGTTAGCTGTGACAGG CCTTGTGAGATCAAAAAAGTGGGAAGTACAATATGTGGAGAAGATACTATGCAATATCGAATCGATGTTTCAGGACTTGGCATTAGGTCGGGCTTCCGAG ATCATAAACCCTCATCTCTTCCATCAGCTGGAAAGGAAAAAAATTATGCTTGAAAGTGATGATGTTGATGCTAGGCTAGAGCGGAAAGTATTATTTGATT GTGCAAGCGAATGCTTGGATTTGAGATGCAGACGATATGTTGGTGGTGGATACAAAGCATGGGTGAAAGGGACAACAATGGTGAGAAGAAAGGAATGGCT AGCTGAAGATATGTACAAGGAGATCTCTGAATGGAGCAGGATGGGGGATTGTATGGTGGATGAACTTGTAGACAAGGACATGAGCAGTCAGTATGGAAGG TGGCTGGACTTTGAAGTAGATGCATATGCACTTGGAGTGGAGTTTGAAAGCCAAATATTTAATTCATTGGTTAATGAAGTTGTTGCTGATATCTTGCGGT TTTGA
AA sequence Show only first row Show all	>Potri.008G108600.1 pacid=42807786 polypeptide=Potri.008G108600.1.p locus=Potri.008G108600 ID=Potri.008G108600.1.v4.1 annot-version=v4.1 MGIEKEGSKSGGYVGGFFQLFDWTAKSRKKLFSSKSDLPERSKQGKRSDGSLPMTRLHLMDDDENGAGSGIRGGSDYSCASSVTDDDGYGARAPGVVARL MGLDSMPTSNLSEPNSTPSFDTQSLRDASRGSRNFDYYQDHQIAYSGNLLDKEDRPPRNFEESKSHKVLSRPIEKFQTEILPPKSAKSIPITHHKLLSPI KSPGFIPNKTAAHIMEAAAKIIEPGPQAAAKPKMPAVGSSSVPLKVRDLKEKLEVAQKMPLAGSSSAALRTREPKEKVEVSHKTLRLAETSRRPVESNAA KHLKGQSLNKSWNGSDDTSCRAFSETDEGSSSSKTKGKSISLAIQAKVNVQRREGLNSSSRQGFVGQKELREVSSSQSFKCQPNVQKSLQKRSPVQNTSG VLRQNNQKQNCIMDKDKLPSKPLVSKLQGKRVLSGNPPVRHKTSGKPFGSKNGSRKLDLDLREGEKGNSNYSMANNPRKKRSIDGNLHVEKNQVVDNKLI DRNRKAVEPTPVIDRPFSWAEESKRKGMDVVSFTFTAPLTRSMPGSETPTQAVQKNSGSCMDNCSKRLLLDTDSMKLSSVGYNVIGGDALSSLLEQKLRE LTKGVESSSSISTFSSGGAAPRLHDNKDQSFSCIDKSDSCYDSPSALFFTDPAALRLKHTFQGVDEMDCSSKSNDSRQLLDCRRPSPVSVLEHSFSTESS SSLDSMDSCSTEGNKHCSSIQTQEVLSLSSTKRVHFVDADMELSDSASSTSTGTVARKHSIMLAVTGLVRSKKWEVQYVEKILCNIESMFQDLALGRASE IINPHLFHQLERKKIMLESDDVDARLERKVLFDCASECLDLRCRRYVGGGYKAWVKGTTMVRRKEWLAEDMYKEISEWSRMGDCMVDELVDKDMSSQYGR WLDFEVDAYALGVEFESQIFNSLVNEVVADILRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58650			unknown protein		Potri.008G108600 [exp]	0	1
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Potri.003G138000 [exp]	2.00	0.9294
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.011G131500 [exp]	4.69	0.9403
AT5G60930			P-loop containing nucleoside t...		Potri.005G150800 [exp]	12.72	0.9171
AT1G63100	GRAS		GRAS family transcription fact...		Potri.001G109400 [exp]	15.49	0.9136
AT1G72250			Di-glucose binding protein wit...		Potri.001G436200 [exp]	17.88	0.9167
AT1G26760		SDG35, ATXR1	SET domain protein 35 (.1)		Potri.008G089500 [exp]	26.19	0.9122	SDG942
AT5G60930			P-loop containing nucleoside t...		Potri.002G106000 [exp]	27.98	0.9089
AT3G19050		POK2	phragmoplast orienting kinesin...		Potri.004G145800 [exp]	28.56	0.9020
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Potri.008G195800 [exp]	29.22	0.9043
AT1G18550			ATP binding microtubule motor ...		Potri.012G058400 [exp]	29.79	0.9089

Compare expression of checked genes

Potri.008G108600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.