Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69060 256 / 7e-76 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T155180 [exp] 1266 / 0 AT1G69060 256 / 7e-76 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G139100 [exp] 908 / 0 AT1G69060 278 / 1e-83 Chaperone DnaJ-domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036825 [exp] 234 / 2e-68 AT1G69060 226 / 4e-66 Chaperone DnaJ-domain superfamily protein (.1) Lus10019189 [exp] 231 / 4e-67 AT1G69060 223 / 6e-65 Chaperone DnaJ-domain superfamily protein (.1) Lus10019188 [exp] 124 / 3e-29 AT3G14630 158 / 5e-41 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G109100.6 pacid=42807673 polypeptide=Potri.008G109100.6.p locus=Potri.008G109100 ID=Potri.008G109100.6.v4.1 annot-version=v4.1 ATGAAAGGGAAGGGAGTATCGAGAGATTATTCTCGACGTAGAATTCGATCTGGAAAGAGAACGACAAGGAGTCTTGATAATATAGTTGTGATTGATGTCG ATAGTGATGATGAGTTTGATAATGTTATTATCATTGATGTCCCGGAGTCTTTACAGCAGAAATTAAGAGGTTCTAATGTTGTTAGAGAAGGAAGAAGTTT TCCGTGCATAATAAGCATTGATGATGATGATGATACAGTGGATGATCATGAAATTAATGCGCAAGGTGATGGTAACTTGGATAGTGATGGCACTTCTAGT CACAGCAGTCCTGCCTCTGATTGTATAGGGAAATCTGTTTATAGGGATGCTGATGGTTGTCGAGTTGCTGAGGAGAATAGGCCTGTGTTCAAGTTGAGAA AGTGCAATAGAACTTATCCTGAGAAAGCTCCCTCCAGAAAACGTTATGGTTTAGATTCAGATTCCGAGAGTGATTCGTCTGAAGATAGCACCTCTGACTG TGAAGTCATGGAAGGATCTTTTGGAGAGGTTCGAGAACAGTGGGAAAAGGCTTCCCTGAAGAGAAAATCCAAGTCCTGTAAAGGTCTGGATGACCAGGCT AGTCCATGCAGTTCCCACGGTGATGTTCATCCAAATGCTGAAGTAGAAAACAGAACTAAACAAAATCCAGATCCTTCTGTTTGCTCTAGTTCAAAAAATG TAAATTTTGAGAAAGTGAACACTTGTGCCTCCACTTCCACTAGAGATGGAGTTCTGGGTGGTTGTTCTTCCAGTGCCAAGATGGAAAATCCTTTTGCAAA TTATAACCAGAAAGGTGAAAGCTTTTCAAGGCCACAGAAATCAAGAACAAATGAGAATATTCATTTTCATTGGAAGAGCGATGATCTTTGTGGAGGAGAG AGATCCATGGATGATAGTAGTACTTCCTATAACAAGTTTCGAACTTTAAATGGCCTTGGCACTAGGTTTCCTCCAGGGCCTTCTTCATGGTCCAATCAAG AAAAGGATGATAAACAGTATCATCATAGAAGAGCATGTTTTCAGGATATGGAACAAAACACTGCGACAGGGCATTCTTTTCCAAATGACCAAAGTGGACC TAACTTGCACTCAGATGATGGGAAAGCTAGTGTTTTGAATGAAGATGCTTCTTTACCTGATGGTCACTTTCTCGGTGAGAAACATGATGTTATTAACAGT CAAGTTGATTCAAAGGAGGAATATAAAGAATTTACTCAGGTGCCATCTAGTTGCAAGATTCTTTCAAATGAGGCACAATGCAGAGAGAAGTTTGTGTCTT ATGCTCGATCATCTGAGGACAAAGTGGTTGAAAATGTTATAGCTTCTTCATGTACTACACAAGAAGTCAGTGATGAGAAATCTGGTCATCAGAAAATGGT TGAAAGAGCTGCCAGGGAAAAGTCTTCACAATGTCACGACAGACTAGGTAGGCCAGGAACATCAAATTCTGCAGAAGGAAAGGAGGTGTGTACTGATTTT GCATCCAGCAGTCAACTTCATCACGAAAGGGATCCGTTATGTGCTTTACCTGGTGCTCGTTTTCCTTATGCTGTAAAGGATATAATCAATGACCGAGAAA AGCTCAAGGAGACTGAAGAATACAAACAAGCAATGGAAGAAGAATGGGCTGCTAGACAGCAGCAGCTACAGATTCAGGCAGAAGAGGCTCAGAGATTGCG GAAGAGAAGAAAAGCTGAAACTTTGCGTATTTTGGACATGGAGAGAAGGCAAAAACAGCGTGTGGAAGAAATGAGAGAGACACAAAAGAAGGATGAAGAG AATTTGAACATCAAGGAGAGATTTCGTGTTGAAGTAAGGAAGGAGCTTTATAGATTGGAGGTTACCTGCATTAACATGGCATCCTTACTTCGTGGCTTGG GAATCCATGTGGAAGGTGGTTTCCAACCCTTGCCAAATCAGGTGCATGCAGCTTATAAGCGAGCCTTGCTAAAATTTCATCCTGACCGCGCGTCAAAAAC TGACATTCGTCGGCAAGTTGAGGCTGAGGAAAAATTTAAGCTTATTTCCCGCATGAAGGAGAAATTTTTGTCCACTTCATGTTACTAG
AA sequence Show only first row Show all	>Potri.008G109100.6 pacid=42807673 polypeptide=Potri.008G109100.6.p locus=Potri.008G109100 ID=Potri.008G109100.6.v4.1 annot-version=v4.1 MKGKGVSRDYSRRRIRSGKRTTRSLDNIVVIDVDSDDEFDNVIIIDVPESLQQKLRGSNVVREGRSFPCIISIDDDDDTVDDHEINAQGDGNLDSDGTSS HSSPASDCIGKSVYRDADGCRVAEENRPVFKLRKCNRTYPEKAPSRKRYGLDSDSESDSSEDSTSDCEVMEGSFGEVREQWEKASLKRKSKSCKGLDDQA SPCSSHGDVHPNAEVENRTKQNPDPSVCSSSKNVNFEKVNTCASTSTRDGVLGGCSSSAKMENPFANYNQKGESFSRPQKSRTNENIHFHWKSDDLCGGE RSMDDSSTSYNKFRTLNGLGTRFPPGPSSWSNQEKDDKQYHHRRACFQDMEQNTATGHSFPNDQSGPNLHSDDGKASVLNEDASLPDGHFLGEKHDVINS QVDSKEEYKEFTQVPSSCKILSNEAQCREKFVSYARSSEDKVVENVIASSCTTQEVSDEKSGHQKMVERAAREKSSQCHDRLGRPGTSNSAEGKEVCTDF ASSSQLHHERDPLCALPGARFPYAVKDIINDREKLKETEEYKQAMEEEWAARQQQLQIQAEEAQRLRKRRKAETLRILDMERRQKQRVEEMRETQKKDEE NLNIKERFRVEVRKELYRLEVTCINMASLLRGLGIHVEGGFQPLPNQVHAAYKRALLKFHPDRASKTDIRRQVEAEEKFKLISRMKEKFLSTSCY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69060			Chaperone DnaJ-domain superfam...		Potri.008G109100 [exp]	0	1
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.012G041900 [exp]	6.24	0.8010	NANN.1
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Potri.009G025700 [exp]	12.32	0.7364	ACA3.2
AT1G07150		MAPKKK13	mitogen-activated protein kina...		Potri.009G073200 [exp]	15.19	0.7499
AT5G24430			Calcium-dependent protein kina...		Potri.012G023300 [exp]	18.00	0.7713	CRK4
AT2G40260	GARP		Homeodomain-like superfamily p...		Potri.005G205900 [exp]	19.74	0.7703
AT3G26020			Protein phosphatase 2A regulat...		Potri.010G054400 [exp]	28.49	0.7279
AT3G22260			Cysteine proteinases superfami...		Potri.016G019700 [exp]	28.53	0.7333
AT4G00900		ATECA2, ECA2	ER-type Ca2+-ATPase 2, ARABIDO...		Potri.014G101900 [exp]	33.31	0.7561	Pt-ECA2.1
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Potri.006G227500 [exp]	37.88	0.7193
AT2G38870			Serine protease inhibitor, pot...		Potri.010G075200 [exp]	39.87	0.7522

Compare expression of checked genes

Potri.008G109100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.