Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69040 723 / 0 ACR4 ACT domain repeat 4 (.1.2) AT2G03730 632 / 0 ACR5 ACT domain repeat 5 (.1.2) AT3G01990 518 / 0 ACR6 ACT domain repeat 6 (.1) AT1G76990 459 / 5e-159 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT1G12420 420 / 4e-144 ACR8 ACT domain repeat 8 (.1) AT4G22780 410 / 4e-140 ACR7 ACT domain repeat 7 (.1) AT5G25320 392 / 2e-132 ACT-like superfamily protein (.1) AT5G65890 345 / 5e-114 ACR1 ACT domain repeat 1 (.1.2) AT1G16880 54 / 6e-08 ACR11 ACT domain repeats 11, uridylyltransferase-related (.1.2) AT2G36840 46 / 3e-05 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124144 [exp] 919 / 0 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.010G138600 [exp] 876 / 0 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2) Potri.001G327000 [exp] 569 / 0 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.012G083000 [exp] 516 / 0 AT1G69040 493 / 3e-173 ACT domain repeat 4 (.1.2) Potri.001G060100 [exp] 505 / 2e-177 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.015G100300 [exp] 503 / 8e-177 AT1G69040 483 / 3e-169 ACT domain repeat 4 (.1.2) Potri.003G167800 [exp] 493 / 1e-172 AT1G69040 486 / 1e-170 ACT domain repeat 4 (.1.2) Potri.012G102200 [exp] 488 / 1e-170 AT1G69040 473 / 5e-165 ACT domain repeat 4 (.1.2) Potri.003G116600 [exp] 486 / 5e-170 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036827 [exp] 745 / 0 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10012550 [exp] 564 / 0 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10041543 [exp] 556 / 0 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10003136 [exp] 511 / 2e-179 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 508 / 2e-178 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10019191 [exp] 471 / 2e-166 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10028646 [exp] 467 / 3e-162 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10018943 [exp] 467 / 2e-159 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10011715 [exp] 386 / 4e-130 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2) Lus10006662 [exp] 363 / 1e-122 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [poplar] [flax] ACT PF13740 [poplar] [flax] ACT_6 ACT domain
Representative CDS sequence Show only first row Show all	>Potri.008G109200.3 pacid=42807391 polypeptide=Potri.008G109200.3.p locus=Potri.008G109200 ID=Potri.008G109200.3.v4.1 annot-version=v4.1 ATGTGTTTTGCGTTGATGATGGTTATTTCTCAAGAAACCAACTTTTTGGTTTTATGGGCTGGTTTTGTTCTCATAGCTTTTCTTTTTTATTTTCCGTTCA AAATTTTTATTTCTACAGAGGTCAACATGAGCTTTTCAAATGATCTGGATGATGAATATGAGAAGCTCTTTAGGAGATTGAATCCACCGAGGGTTGTGAT TGATAATGAAGCTTGCAAGAATGCTACTGTTATAAGGGTTGACAGTGCTAACAAACATGGAAAACTTCTTGAAGTTGTTCAAGTCCTCACTGATCTAAAC CTTATCATAACCAAAGCTTACGTATCCTCTGATGGTGGATGGTTCATGGATGTTTTTAATGTTACGGATCAAGATGGAAACAAGGTTACCGATGAAGCAA TTCTAGATTATATTACAAAGTCGTTAGGGACAGAATCTTGCTTTACATCTTCCATGGGATCTTTTGGGGTTAAACAATCTATAGATCACACTGCAATTGA GTTAACAGGAAGTGACAGACCAGGGCTGCTATCTGAAGTGAGTGCTGTCCTCGCCCATTTAAAATGCAATGTATTGAATGCAGAGGTCTGGACACACAAT ATGCGGGCAGCAGCCGTGATGCAAGTAACTGATGATGAAACCGGGTCAGCAATTACTGACCCAGAGAAGCTATCGAGGGTCAAGGAACTTCTTTGTAATG TACTGAAGGGCAGTAACAAATATAGGGGAGCTAGGACTGTCGTGTCTCATGGGGTCACCCATACTGAGAGAAGGCTTCACCAAATGATGTTTGCTGATAG GGATTATGAACGAGCTAACAATGATGTATTGGATGAGAAGCAAAGACCTAATGTGAGTGTGGTGAATTGGTATGAGAAGGACTACTCAGTGATAACTATA AGAAGTAAAGATAGACCAAAGCTTCTCTTCGATACGGTTTGCACATTGACAGACATGGAGTATGTAGTTTTTCATGCTAATATAGATGCCGAGGGTCCAG AAGCTCATCAGGAATATTATATCAAGCATGTTGATGGTTCCCCTGTAAAATCAGAGGCAGAGAGACAAAGAATTATACAATGTCTTGAAGCAGCTATTGA AAGAAGAGTATCTGAGGGCTTGAAGCTAGAGTTATGCACTAAGGACAGAATTGGGCTGCTATCTGATGTTACTCGTATCTTTCGTGAAAATAGCCTTACT GTCACCAGAGCAGAAGTTACAACAAGAGCAGGCAAAGCTGTTAATACATTTTATGTTAGTGATGCATCAGGGTATCCTGTTGATGCTAAAACCATAGATT CCATCCGGCAAGCAACTGGCCAGACCATACTGAAGGTGAAAGGCAGTCCTGAAGAGTTAAAACCGGTCTCTCAGGAATCACCCACAAGGTTTCTCTTTGG AGGTCTCTTCAAATCGAGATCTTTTGTCAACTTTGGATTGGTTAAGTCGTATTCTTGA
AA sequence Show only first row Show all	>Potri.008G109200.3 pacid=42807391 polypeptide=Potri.008G109200.3.p locus=Potri.008G109200 ID=Potri.008G109200.3.v4.1 annot-version=v4.1 MCFALMMVISQETNFLVLWAGFVLIAFLFYFPFKIFISTEVNMSFSNDLDDEYEKLFRRLNPPRVVIDNEACKNATVIRVDSANKHGKLLEVVQVLTDLN LIITKAYVSSDGGWFMDVFNVTDQDGNKVTDEAILDYITKSLGTESCFTSSMGSFGVKQSIDHTAIELTGSDRPGLLSEVSAVLAHLKCNVLNAEVWTHN MRAAAVMQVTDDETGSAITDPEKLSRVKELLCNVLKGSNKYRGARTVVSHGVTHTERRLHQMMFADRDYERANNDVLDEKQRPNVSVVNWYEKDYSVITI RSKDRPKLLFDTVCTLTDMEYVVFHANIDAEGPEAHQEYYIKHVDGSPVKSEAERQRIIQCLEAAIERRVSEGLKLELCTKDRIGLLSDVTRIFRENSLT VTRAEVTTRAGKAVNTFYVSDASGYPVDAKTIDSIRQATGQTILKVKGSPEELKPVSQESPTRFLFGGLFKSRSFVNFGLVKSYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.008G109200 [exp]	0	1
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Potri.006G065100 [exp]	1.00	0.8875
AT1G29350			Kinase-related protein of unkn...		Potri.001G353100 [exp]	1.41	0.8841
AT1G14740			Protein of unknown function (D...		Potri.008G138100 [exp]	3.16	0.8604
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Potri.014G025700 [exp]	3.16	0.8514	NAC146
AT4G24200			Transcription elongation facto...		Potri.005G241400 [exp]	4.89	0.8775
AT5G47430			DWNN domain, a CCHC-type zinc ...		Potri.001G156000 [exp]	6.70	0.8488
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.017G150100 [exp]	7.74	0.8499
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Potri.002G094200 [exp]	8.06	0.8496	DREB19
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G046800 [exp]	8.94	0.8655
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Potri.005G168700 [exp]	10.95	0.8408

Compare expression of checked genes

Potri.008G109200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.