Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26170 1339 / 0 ARM repeat superfamily protein (.1) AT2G46520 69 / 1e-11 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) AT3G08960 68 / 4e-11 ARM repeat superfamily protein (.1) AT3G59020 57 / 7e-08 ARM repeat superfamily protein (.1.2) AT2G31660 50 / 8e-06 EMA1, URM9, SAD2 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) AT1G24822 0 / 1 unknown protein AT1G25097 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T108626 [exp] 1941 / 0 AT1G26170 1345 / 0.0 ARM repeat superfamily protein (.1) Potri.014G100000 [exp] 69 / 2e-11 AT2G46520 1464 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.002G172700 [exp] 67 / 5e-11 AT2G46520 1421 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.016G119900 [exp] 66 / 2e-10 AT3G08960 1547 / 0.0 ARM repeat superfamily protein (.1) Potri.014G149600 [exp] 62 / 2e-09 AT2G31660 1543 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.002G232600 [exp] 58 / 4e-08 AT2G31660 1499 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.010G169800 [exp] 48 / 4e-05 AT4G27640 1584 / 0.0 ARM repeat superfamily protein (.1) Potri.008G085800 [exp] 48 / 4e-05 AT4G27640 1605 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035079 [exp] 1185 / 0 AT1G26170 1225 / 0.0 ARM repeat superfamily protein (.1) Lus10000328 [exp] 627 / 0 AT1G26170 645 / 0.0 ARM repeat superfamily protein (.1) Lus10031911 [exp] 253 / 1e-77 AT1G26170 283 / 1e-89 ARM repeat superfamily protein (.1) Lus10007842 [exp] 68 / 3e-11 AT3G08960 1493 / 0.0 ARM repeat superfamily protein (.1) Lus10004753 [exp] 66 / 2e-10 AT3G08960 1432 / 0.0 ARM repeat superfamily protein (.1) Lus10025509 [exp] 64 / 5e-10 AT2G31660 1591 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10026726 [exp] 63 / 9e-10 AT2G31660 1084 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10005969 [exp] 57 / 7e-09 AT2G46520 250 / 2e-77 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10030241 [exp] 58 / 4e-08 AT2G46520 1438 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10029067 [exp] 52 / 4e-06 AT4G27640 1646 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF03810 [poplar] [flax] IBN_N Importin-beta N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G109300.1 pacid=42808643 polypeptide=Potri.008G109300.1.p locus=Potri.008G109300 ID=Potri.008G109300.1.v4.1 annot-version=v4.1 ATGGCAAACCTAATCGATCAAGATCAAGAATGGCTACTCAATTGCCTGAATGCCACTCTCGATCCTAACCAGGAAATCCGTTCCTTGGCCGAAGTTTCTC TTCGCCAAGCCTCTCTTCAACCAGGTTTTGGAGTGGCATTATCAAAAGTTGCTGCGAACAAGGAACTTCCTTTTGGATTGCGTCAGCTAGCTGCCGTACT ATTGAAGCAATTTATCAAGAAACATTGGCACGAAAGCGAGGAGTCTTTCGAGCCGCCTGCTGTTGCAACTGAAGAGAAGGAAGTTATACGGAGACTACTT TTACCGTCGTTGGATGATTCTCATCGGAAAATTTGTACTGCAATTAGCATGGCTATTGCTTCGATTGCTGTTTATGACTGGCCTGAGAATTGGCCTGATT TATTGCCGTTTCTTTTGAAGTTGATTAACGATCGAACCAATGTGAGCGGAGTGCATGGAGCTCTAAGGTGTCTGGCTCTTCTCTCTGGGGATTTGGATGA TACAGTGGTGCCCACACTAGTACCAGTTTTGTTCCCATGCTTGCTTACAATTGTATCGTCACCTCAGAATTATGACAACTACTTGCGTACGAAAGCCCTT ACAATAGTTTATTCTTGCGTGTCTGTGCTCGGGATCATGAGTGGTGTATATAAGACAGAAATCAGTGCCTTGATAACACCAATGCTTAAACCATGGATGG ATCAGTTCTCTGTTATCTTAGAACCGCCTATGCAACCTGAAGATCCTGATAATTGGAGCTTGAGAATGGAGGTTTTAAAGTGCTTGAATCAGTTTGTTCA GAATTTCCCTAGCCTTACTGAAAGTGAATTCATGGTGATAGTTGGACCCTTGTGGCAAACATTTGTAACATCTCTAAGTGTGTACGTGCGGTCATCAATT GAATGTACAGAAGATCCCTATGGAGATAGATATGACTCTGATGGTGCTGAGAAAAGTCTTGATGCATTTGTCATCCAGCTTTTTGAGTTTTTGTTGACCA TTGTGGGCAGTGCAAAATTAATGAAGGTAGTTAAGAATAACATCAAGGAGTTGGCATATTACACTATAGCTTTCCTGCAAATGACAGAACAACAAGTTCA TACTTGGTCAAGGGATGCAAACCAATTTGTTGCTGATGAGGATGATGCTACTTATAGCTGTCGTGTTTCTGGTGTACTTTTGCTAGAGGAGGTGGTGAAT TCTTTTGGCAGTGAAGGAATTTATGCCATTATAGATGCCATGAGAGAGAGATTCAATGAGTCTGAACGAGAAAAGGCTGCTGGTTCAGCAGCTTGGTGGC GAATAAGGGAGTCTATCCTCTTTGCTTTGGCTGATCTCTCAGACCAATTGCTTGATGCAGAGGCATCAGGGATGATCAGTGTGAATTTAGGAAACCTTGT AGAGCAGATTGTCACTATAGATGTTGGAACAGGGGTGCATGAATATCCCTTTCTTTATGCACGTATTTTTACATCAGTTGCTAAGTTCTCCTCTGTGATC AGCCATGGAGTTCTCGAGCATTTCCTCCATGCTGCTATCAAGGGAGTTGGCATGAATGTGCCTCCACCTGTGAAAATGGGTGCTTGTCAGGCACTTTCTC AACTCCTGCCTGAAGCTAACAAAGAAAATATTCAGCCTCAACTGATGGGCTTGTTTTCATCTCTCACTGATCTTCTTCATCAGGCATCTGATGAAACATT ACACCTGGTGCTTGAAACACTGCAAGCATCTATTAAGGCAGTTCGTGAAGCAGCAGTATCATTCGAGTCTGTTGTCTCACCTGTAGTTCTTAATACATGG GCATTGTATGTTTCTGATCCTTTTCTCAGTATTGATGCCATTGAGGTTCTGGAGGCCTTGAAAAATGCTCCTGGTGGTATTCATCCATTGGTTTCTCGAA TTTTGCCGCATATCGGACCAATATTAAATAAACCTTACCAGCAGCCTGATGGATTGGTGGCCGGATCACTTGATTTGGTGACTATGCTATTAAAGAATGC TCCAAGTGATATCATAAAAGCCATTTATGATACTTGCTTTGATGCTGTTATTCGAATAGTCCTTCAAAGTGATGATCACAGTGAAATGCAGAATGCCACA CAATGTCTGGCTTCATTTATATCCGGGGGGAGAGAAGAAATACTTTCTTGGGCTGCTGATTCTGGATTCACAATGAGAAGTTTGCTTGATGCAGCTTCAA GGCTTCTCGACCCTGGTATGGAAAGCTCTGGATCTCTTTTTGTTGGGAGTTACATTTTGCAGCTTATTTTACATCTACCATTGCAAATGGCAATGCATAT CCGAGATCTAGTTACTGCTCTTGTTAGACGAATGCAGTCAGCTCAAATAGTGGGGTTGAAAAGTTCATTATTGCTTATTTTTGCTAGATTGGTCCACATG AGTGTTCCTCATGTTGAACAATTTATTGATATGCTGATTGGTATACCAGCTGAAGGCTATGAAAACTCCTTTGTTTATGTGATGTCAGAATGGACTCAGA AGCAAGGCGAGATTCAAGGGGCTTATCAAATTAAGGTCACAACCAGTGCTTTGGCCTTGTTGCTATCCACTAGGCACGCTGAATTGAATAAAGTTAATGT GCTAGGACATCTAAAGTCTGCTGCAGGAATTACCACTCGGTCAAAAGCTAAATTGGCCCCTGATCAGTGGACTTTAGTGCCTCTTCCTGTAAAGATATTG GCTTTGCTGGCAGACACCGTGATTGAATTCCAAGAACAGGCAATGGCTGATGATGAGGAGAGCGACTGGGAAGAAATTCAAGGAGGGGTGGCAGAGTCTA ATGATAGTTTGCTGTCCTCTGCTGCTGCTCCATTCGGCAGAACTACATATGGCCAACTTGAAGCAATGGCGAAAGCATATAATGAGAATGAAGAGGATTG GGATGATGATGATCTATTGAGTGTTTCCGATCAGCTCAATGGGATTAACTTGGTAAATTATCTTGCGGACTTCTTTGCAAAGTTCGTTCATAGCAACAGA CAGCTATTTGATCATCTTTGCCAGAGTTTGGCACAGGCTCAACGTGATGCTATACAGACATTGCTACGATGCTGA
AA sequence Show only first row Show all	>Potri.008G109300.1 pacid=42808643 polypeptide=Potri.008G109300.1.p locus=Potri.008G109300 ID=Potri.008G109300.1.v4.1 annot-version=v4.1 MANLIDQDQEWLLNCLNATLDPNQEIRSLAEVSLRQASLQPGFGVALSKVAANKELPFGLRQLAAVLLKQFIKKHWHESEESFEPPAVATEEKEVIRRLL LPSLDDSHRKICTAISMAIASIAVYDWPENWPDLLPFLLKLINDRTNVSGVHGALRCLALLSGDLDDTVVPTLVPVLFPCLLTIVSSPQNYDNYLRTKAL TIVYSCVSVLGIMSGVYKTEISALITPMLKPWMDQFSVILEPPMQPEDPDNWSLRMEVLKCLNQFVQNFPSLTESEFMVIVGPLWQTFVTSLSVYVRSSI ECTEDPYGDRYDSDGAEKSLDAFVIQLFEFLLTIVGSAKLMKVVKNNIKELAYYTIAFLQMTEQQVHTWSRDANQFVADEDDATYSCRVSGVLLLEEVVN SFGSEGIYAIIDAMRERFNESEREKAAGSAAWWRIRESILFALADLSDQLLDAEASGMISVNLGNLVEQIVTIDVGTGVHEYPFLYARIFTSVAKFSSVI SHGVLEHFLHAAIKGVGMNVPPPVKMGACQALSQLLPEANKENIQPQLMGLFSSLTDLLHQASDETLHLVLETLQASIKAVREAAVSFESVVSPVVLNTW ALYVSDPFLSIDAIEVLEALKNAPGGIHPLVSRILPHIGPILNKPYQQPDGLVAGSLDLVTMLLKNAPSDIIKAIYDTCFDAVIRIVLQSDDHSEMQNAT QCLASFISGGREEILSWAADSGFTMRSLLDAASRLLDPGMESSGSLFVGSYILQLILHLPLQMAMHIRDLVTALVRRMQSAQIVGLKSSLLLIFARLVHM SVPHVEQFIDMLIGIPAEGYENSFVYVMSEWTQKQGEIQGAYQIKVTTSALALLLSTRHAELNKVNVLGHLKSAAGITTRSKAKLAPDQWTLVPLPVKIL ALLADTVIEFQEQAMADDEESDWEEIQGGVAESNDSLLSSAAAPFGRTTYGQLEAMAKAYNENEEDWDDDDLLSVSDQLNGINLVNYLADFFAKFVHSNR QLFDHLCQSLAQAQRDAIQTLLRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26170			ARM repeat superfamily protein...		Potri.008G109300 [exp]	0	1
AT1G64790		ILA	ILITYHIA (.1.2)		Potri.019G024200 [exp]	2.00	0.9079
AT5G24830			Tetratricopeptide repeat (TPR)...		Potri.018G004400 [exp]	2.23	0.8696
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.015G028101 [exp]	7.54	0.8918
AT3G63240			DNAse I-like superfamily prote...		Potri.002G050000 [exp]	9.38	0.8586
AT1G34150			Pseudouridine synthase family ...		Potri.002G061650 [exp]	10.39	0.8745
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Potri.005G101900 [exp]	14.69	0.8582
AT4G23660		ATPPT1	polyprenyltransferase 1 (.1.2....		Potri.005G093700 [exp]	16.30	0.8551
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Potri.018G009100 [exp]	17.88	0.8268	SRZ.4
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Potri.016G120200 [exp]	20.00	0.8672
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Potri.013G147200 [exp]	20.14	0.8675

Compare expression of checked genes

Potri.008G109300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.