Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13480 321 / 2e-107 Protein of unknown function (DUF1262) (.1) AT1G13530 313 / 1e-104 Protein of unknown function (DUF1262) (.1) AT1G13520 309 / 7e-103 Protein of unknown function (DUF1262) (.1) AT1G13470 306 / 2e-101 Protein of unknown function (DUF1262) (.1) AT1G61600 294 / 2e-96 Protein of unknown function (DUF1262) (.1) AT1G13500 286 / 6e-94 Protein of unknown function (DUF1262) (.1) AT1G13550 280 / 2e-91 Protein of unknown function (DUF1262) (.1) AT1G13540 276 / 6e-90 Protein of unknown function (DUF1262) (.1) AT1G13510 270 / 1e-87 Protein of unknown function (DUF1262) (.1) AT1G13490 269 / 2e-87 Protein of unknown function (DUF1262) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T093108 [exp] 764 / 0 AT1G13480 323 / 3e-108 Protein of unknown function (DUF1262) (.1) Potri.008G109500 [exp] 490 / 1e-173 AT1G13480 339 / 3e-114 Protein of unknown function (DUF1262) (.1) Potri.T077590 [exp] 479 / 8e-170 AT1G13480 334 / 1e-112 Protein of unknown function (DUF1262) (.1) Potri.010G133500 [exp] 464 / 1e-163 AT1G13480 310 / 3e-103 Protein of unknown function (DUF1262) (.1) Potri.018G008300 [exp] 452 / 1e-158 AT1G13480 330 / 1e-110 Protein of unknown function (DUF1262) (.1) Potri.004G106100 [exp] 360 / 2e-122 AT1G61600 398 / 5e-137 Protein of unknown function (DUF1262) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031913 [exp] 367 / 7e-125 AT1G13480 305 / 8e-101 Protein of unknown function (DUF1262) (.1) Lus10035080 [exp] 347 / 4e-117 AT1G13520 313 / 6e-104 Protein of unknown function (DUF1262) (.1) Lus10030977 [exp] 283 / 2e-92 AT1G61600 342 / 9e-115 Protein of unknown function (DUF1262) (.1) Lus10031916 [exp] 236 / 2e-76 AT1G61600 178 / 9e-54 Protein of unknown function (DUF1262) (.1) Lus10031914 [exp] 137 / 1e-38 AT1G13550 114 / 2e-30 Protein of unknown function (DUF1262) (.1) Lus10031915 [exp] 93 / 1e-22 AT1G13510 108 / 8e-29 Protein of unknown function (DUF1262) (.1) Lus10035372 [exp] 59 / 2e-10 AT1G61600 84 / 2e-19 Protein of unknown function (DUF1262) (.1) Lus10035379 [exp] 57 / 1e-09 AT1G61600 83 / 3e-19 Protein of unknown function (DUF1262) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06880 [poplar] [flax] DUF1262 Protein of unknown function (DUF1262)
Representative CDS sequence Show only first row Show all	>Potri.008G109400.2 pacid=42806994 polypeptide=Potri.008G109400.2.p locus=Potri.008G109400 ID=Potri.008G109400.2.v4.1 annot-version=v4.1 ATGTATGTGACAAGGCCTCTTTCGATGTATCTAAGAGATCCTTCAGCTCTTGCATCACCGCCTCCCGAGGGTCCAAATTCTGGTGTATTGGTAATCCAGG ATGAAGAAGCTGTGCCTACCTTCTGTTGTGGATTTTTCAAGAGTGATCGAGTAAGCTGGGGCCTGCCTTTCCCTCAAAACAAGAACTTGACGGTTCGGTA TACGCAGCAAACTGGGGAGCATCAAGACGTTGATACGAACCGTGTTCTTTTCATTCCTGTTCTTAATCAGCCATTATCTTCCAATCAATACTACGTGGTT GAAAGAAAAGGGAAGCATAAAGGGGAAGCTTACATAAACTCCAAGGAAGAGGACATGAAAACATGCTGTTTCTGCTCCTGCATATCTGATTTAAAACCGC AACCTTTGGACCCTAGAAACATTTATCAGCAATTTGAGATTCAACACCGTAAACGGGGAGGTTTTGCTGCTAAATCCGTAAGGGCAGATGGGTTTCCTCC AAATTTCCTGAGGAGAAAAGGCTGGCGAGTGTATACCTCAACTTCAAAGGAGTTCCAGCTAAATGAAGCACCAGGCCTTAACACAGCTCTCCGCGCCCGC CTCCCGGACTTCAACTTCCCACTATCACAAAGATGTTCCACGCCTGTAGTAGCGGGGAAGTGGTATTGCCCTTTCATGTTTATCAAGGAAGGGACAGTAC TTAAAGATCAAATGAAATATTCAACCTATTATGAGATGACACTTGAGCAACAATGGGAGCAAATTTTTGCTTGTGAAAATATGTACAATGAAGGCAATAC TGTAACTGTGGATGTTGCTGTTGAATGTGAAGTTGTTACAGTTGGCGGGACAGAAGCTGTGGCGGACCAAAAGGATGTTGTTGATGGGGTGATGTGGTTC AGGAGTCTTAACAGAGTGACAGGATCAGAAACAAGTGTGGGACTGAGAATGGAAATTGTGGAGAGAATGAAGGGGGTGCAGGGAGTAGGGGGTGCTAGTG GGGATGAAAGGGAGGTGAGGGTGAAGAGAAAAGAGGTTTTTGATGGCAAGGGGAAGTGGAGGAAATTTGGTTGCTATGTTTTGGTTGAGAGGTTTGCCTT GAAGAGAATGGATGGAAGCTTATTGCTGACCTATGATTTCAGGCATCCTCATCGCATTAGAAGCAGATGGGAATTATAA
AA sequence Show only first row Show all	>Potri.008G109400.2 pacid=42806994 polypeptide=Potri.008G109400.2.p locus=Potri.008G109400 ID=Potri.008G109400.2.v4.1 annot-version=v4.1 MYVTRPLSMYLRDPSALASPPPEGPNSGVLVIQDEEAVPTFCCGFFKSDRVSWGLPFPQNKNLTVRYTQQTGEHQDVDTNRVLFIPVLNQPLSSNQYYVV ERKGKHKGEAYINSKEEDMKTCCFCSCISDLKPQPLDPRNIYQQFEIQHRKRGGFAAKSVRADGFPPNFLRRKGWRVYTSTSKEFQLNEAPGLNTALRAR LPDFNFPLSQRCSTPVVAGKWYCPFMFIKEGTVLKDQMKYSTYYEMTLEQQWEQIFACENMYNEGNTVTVDVAVECEVVTVGGTEAVADQKDVVDGVMWF RSLNRVTGSETSVGLRMEIVERMKGVQGVGGASGDEREVRVKRKEVFDGKGKWRKFGCYVLVERFALKRMDGSLLLTYDFRHPHRIRSRWEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13480			Protein of unknown function (D...		Potri.008G109400 [exp]	0	1
AT3G01960			unknown protein		Potri.001G328300 [exp]	2.23	0.9234
AT5G63520			unknown protein		Potri.011G010100 [exp]	2.82	0.9248
AT1G30260		AGL79	unknown protein		Potri.011G081001 [exp]	3.74	0.9406
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G157000 [exp]	8.12	0.8896
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014301 [exp]	8.12	0.9349
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G009900 [exp]	11.13	0.8650
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.010G073166 [exp]	11.35	0.9342
AT3G23360			Protein phosphatase 2C family ...		Potri.010G070100 [exp]	11.83	0.9192
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.001G277301 [exp]	17.05	0.8220
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Potri.004G101000 [exp]	18.11	0.9171

Compare expression of checked genes

Potri.008G109400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.