Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13560 685 / 0 AAPT1, ATAAPT1 aminoalcoholphosphotransferase 1 (.1.2) AT3G25585 662 / 0 AAPT2, ATAAPT2 aminoalcoholphosphotransferase (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T031036 [exp] 794 / 0 AT1G13560 682 / 0.0 aminoalcoholphosphotransferase 1 (.1.2) Potri.010G133800 [exp] 738 / 0 AT1G13560 695 / 0.0 aminoalcoholphosphotransferase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034410 [exp] 481 / 1e-171 AT3G25585 509 / 0.0 aminoalcoholphosphotransferase (.1.2.3.4) Lus10019149 [exp] 476 / 6e-164 AT1G13560 477 / 7e-165 aminoalcoholphosphotransferase 1 (.1.2) Lus10002042 [exp] 79 / 8e-18 AT1G13560 81 / 4e-19 aminoalcoholphosphotransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01066 [poplar] [flax] CDP-OH_P_transf CDP-alcohol phosphatidyltransferase
Representative CDS sequence Show only first row Show all	>Potri.008G109833.1 pacid=42806101 polypeptide=Potri.008G109833.1.p locus=Potri.008G109833 ID=Potri.008G109833.1.v4.1 annot-version=v4.1 ATGGGATATATAGGGTCACATGGAATAGCAGCACTGCACAAATACAAATACAGTGGAGTAGATCACTCTTGTGTTGCTAAATATGTTTTGCAACCGTTTT GGGCTCGCTTTGTTAACCTCTTCCCTCTTTGGATGCCGCCGAATATGATTACGCTTATGGGATTTATGTTCTTAGTGACTTCGGCATTTCTCGGTTATAT TTATTCACCTCGCTTGGATACGCCTCCGCCGAGATGGGTTCATTTTGCGCACGGATTGCTTCTATTTTTATATCAGACTTTTGATGCTGTTGATGGAAAA CAAGCTCGGCGGACAAACTCGTCCAGTCCACTGGGGGAGCTTTTTGACCATGGATGTGATGCGCTTGCTTGTGCGTTCGAAAGCATGGCTTTTGGTAGCA CTGCCATGTGTGGAAGAGATACTTTCTGGTTTTGGCTTATTTCAGCAGTTCCATTTTATTGTGCAACATGGGAAAACTTTTTCACCAATACTCTTATTCT TCCAGCAATTAATGGACCTACAGAGGGTCTGATGCTAATATACATGGCTCATTTTCTTACAGCTGTAGTCGGTGCCGGGTGGTGGGCTCAACAGTTTGCG ATGTCTTTCCCATTCTTGAGTTGGTTGCCATTTGTAAGTGAAATCCCTACTTACAGAGTTGTGCAGTTTTTAATGACAGCTTTTGCTGTTATACCTACAG TGGGATTCAATGTGTCTAATGTCTACAAGGTTGTTCAAGCAAGAAAAGGCAGCATGTTGCTGGCTTTAGCAATGCTTTACCCTTTTGTTGTGCTCGTTGG CGGAGTCCTATTGTGGGATTATCTGTCTCCATCTGATCTAATGTCAAACTATCCTCATTTGGTCATATTGGGAACTGGACTTGCATTTGGGTTTCTTGTG GGAAGGATGATTTTGTCTCACTTGTGTGATGAACCGAAGGGATTGAAAACCAACATGTGTATGTCTCTGTTATATCTACCATTTGCCATCGCAAATGCAC TCGCAGCCAGACTGAATGATGGAGTTGCTTTAGTTGATGAGTTCTGGGTTCTTCTTGGTTACTGTGTATTCACAATGGGACTCTATTTGCACTTAGCCAC ATCTGTCATCCATGAAATTACAACAGCTCTGGGAATATGCTGCTTCAGGATAACTAGGAAGAAGGCATGA
AA sequence Show only first row Show all	>Potri.008G109833.1 pacid=42806101 polypeptide=Potri.008G109833.1.p locus=Potri.008G109833 ID=Potri.008G109833.1.v4.1 annot-version=v4.1 MGYIGSHGIAALHKYKYSGVDHSCVAKYVLQPFWARFVNLFPLWMPPNMITLMGFMFLVTSAFLGYIYSPRLDTPPPRWVHFAHGLLLFLYQTFDAVDGK QARRTNSSSPLGELFDHGCDALACAFESMAFGSTAMCGRDTFWFWLISAVPFYCATWENFFTNTLILPAINGPTEGLMLIYMAHFLTAVVGAGWWAQQFA MSFPFLSWLPFVSEIPTYRVVQFLMTAFAVIPTVGFNVSNVYKVVQARKGSMLLALAMLYPFVVLVGGVLLWDYLSPSDLMSNYPHLVILGTGLAFGFLV GRMILSHLCDEPKGLKTNMCMSLLYLPFAIANALAARLNDGVALVDEFWVLLGYCVFTMGLYLHLATSVIHEITTALGICCFRITRKKA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13560		AAPT1, ATAAPT1	aminoalcoholphosphotransferase...		Potri.008G109833 [exp]	0	1
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.014G179000 [exp]	3.60	0.8018	CHY1.1
					Potri.003G137900 [exp]	7.61	0.8509
AT4G15563			unknown protein		Potri.008G204800 [exp]	8.66	0.8322
AT4G13010			Oxidoreductase, zinc-binding d...		Potri.001G343000 [exp]	11.31	0.8280
					Potri.011G072716 [exp]	14.24	0.8236
AT4G25330			unknown protein		Potri.002G216900 [exp]	14.69	0.8145
AT2G38550			Transmembrane proteins 14C (.1...		Potri.006G108700 [exp]	16.43	0.7768
AT3G55920			Cyclophilin-like peptidyl-prol...		Potri.010G189000 [exp]	16.49	0.7977
AT5G57700			BNR/Asp-box repeat family prot...		Potri.006G175161 [exp]	18.16	0.8240
AT1G11120			unknown protein		Potri.019G103800 [exp]	18.33	0.8022

Compare expression of checked genes

Potri.008G109833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.