Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25560 919 / 0 NIK2 NSP-interacting kinase 2 (.1.2.3) AT5G16000 904 / 0 NIK1 NSP-interacting kinase 1 (.1) AT2G23950 748 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G30520 733 / 0 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) AT1G60800 711 / 0 NIK3 NSP-interacting kinase 3 (.1) AT5G45780 605 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G33430 570 / 0 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 547 / 0 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT5G10290 509 / 1e-174 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65240 497 / 6e-170 Leucine-rich repeat protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134100 [exp] 1132 / 0 AT3G25560 927 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.004G108200 [exp] 948 / 0 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.017G108000 [exp] 936 / 0 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.008G188800 [exp] 780 / 0 AT1G60800 930 / 0.0 NSP-interacting kinase 3 (.1) Potri.010G043200 [exp] 774 / 0 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1) Potri.006G179400 [exp] 748 / 0 AT2G23950 889 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G101300 [exp] 729 / 0 AT4G30520 837 / 0.0 SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) Potri.004G059100 [exp] 624 / 0 AT5G45780 837 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G068700 [exp] 611 / 0 AT5G45780 819 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019145 [exp] 981 / 0 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10034413 [exp] 974 / 0 AT5G16000 937 / 0.0 NSP-interacting kinase 1 (.1) Lus10034350 [exp] 926 / 0 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10005103 [exp] 909 / 0 AT5G16000 998 / 0.0 NSP-interacting kinase 1 (.1) Lus10030591 [exp] 798 / 0 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10030898 [exp] 796 / 0 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10019963 [exp] 755 / 0 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015484 [exp] 753 / 0 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007292 [exp] 589 / 0 AT5G45780 801 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029241 [exp] 548 / 0 AT5G45780 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.008G110300.1 pacid=42805987 polypeptide=Potri.008G110300.1.p locus=Potri.008G110300 ID=Potri.008G110300.1.v4.1 annot-version=v4.1 ATGGAGGCAGGCAAAAAGAATGCTCTTTTCTGTTGTGTGGCTTCGTTAATCTGTTTATGGACTACTGCTTATGGAGAGCTAACAGCTGCAGGTGTTAACT ATGAAGTGGAGGCTTTGATGGGCATTAAGAACTCATTGCACGATCCTCATAATATTCTTAACTGGGATGAGCATGCTGTGGATCCATGCAGTTGGGCGAT GGTCACTTGTTCTCCTGATAATTTTGTCACTAGCCTAGGAGCTCCAAGCCAACGTTTATCTGGCACTCTTTCCCCATCTATTGGAAACTTAACGAATCTC CAGTCTCTGCTTCTACAGGATAACAATATTTCGGGACATATACCCTCTGAGCTTGGAAGGCTCTCCAAGCTTAAAACAATTGATCTTTCCAGTAACAACT TCAGTGGCCAAATTCCAAGTGCTCTGTCCAATCTTAATAGCCTCCAATACCTGAGGCTGAACAATAACAGTCTTGATGGAGCAATTCCCGCCTCTTTGGT TAACATGACTCAACTTACCTTTCTGGACTTGTCTTACAATGATTTGAGCACTCCTGTACCACCTGTTCATGCTAAAACATTCAACATTGTAGGAAATCCT CTGATATGTGGAACTGAGCAAGGCTGTGCTGGAACCACACCAGTTCCCCAATCTGTGGCCCTGAATAATTCACAAAATTCTCAGCCTTCTGGAAATAACA AGAGCCACAAAATTGCCCTGGCCTTTGGTTCAAGCCTAGGCTGCATCTGCCTGTTGGTTCTTGGATTTGGCTTCATTCTTTGGTGGAGACAAAGACACAA CCAGCAAATATTCTTTGATGTTAATGAACAACATAATGAAGAACTCAACCTCGGAAACTTGAGGAGCTTTCAATTCAAAGAACTTCAGGTTGCTACAAAC AACTTCAGCAGCAAGAACTTGATAGGAAAAGGTGGCTTTGGGAACGTCTACAAAGGGTATCTCCAAGATGGAACTGTTGTAGCAGTGAAGAGGCTCAAAG ATGGAAATGCCATAGGTGGAGAGATCCAATTCCAGACTGAAGTTGAGATGATCAGCCTAGCAGTGCATCGAAATCTACTTCGTCTCTATGGATTTTGCAT GACAACGACTGAAAGGCTATTGGTTTACCCGTACATGTCTAATGGGAGTGTTGCTACTCGTCTCAAGGCCAAACCAGCCCTGGATTGGGGTACGAGGAAG AGAATTGCCTTAGGAGCAGCTAGAGGTTTATTATACTTGCATGAACAATGCGATCCCAAGATAATTCACAGGGATGTGAAGGCTGCAAATATATTACTTG ATGATTATTGCGAGGCTGTTGTAGGAGATTTTGGATTGGCAAAGCTGTTGGATCACCAGGACTCACATGTGACAACTGCTGTGAGGGGCACTGTGGGGCA CATAGCCCCTGAGTATCTATCAACAGGCCAGTCCTCTGAGAAAACAGATGTTTTTGGATTTGGAATACTTCTGCTAGAATTAATATCTGGCTTAAGAGCT CTGGAATTCGGGAAGTCAACGAACCAGAAAGGAGCATTGCTTGACTGGGTGAAGAAGATTCATCAGGAAAAGAAGCTGGAATTGTTAGTTGACAAGGATC TGAAAAACAACTACGACCGAATTGAGCTTGAAGAAATAGTTCAAGTAGCTCTGTTATGTACCCAATACCTTCCAAGTCATAGACCTAAAATGTCAGAAGT GGTTCGGATGTTAGAAGGAGACGGGCTCGCTGAAAAGTGGGAAGCTTCTCAGAGAGCTGAAGAAACTAGATCAAGAGCCAACGAGTTCTCGTCTTCGGAA AGATATTCTGATCTGACTGATGACTCCTCGCTGCTTGTCCAGGCAATGGAGCTCTCTGGACCCAGGTGA
AA sequence Show only first row Show all	>Potri.008G110300.1 pacid=42805987 polypeptide=Potri.008G110300.1.p locus=Potri.008G110300 ID=Potri.008G110300.1.v4.1 annot-version=v4.1 MEAGKKNALFCCVASLICLWTTAYGELTAAGVNYEVEALMGIKNSLHDPHNILNWDEHAVDPCSWAMVTCSPDNFVTSLGAPSQRLSGTLSPSIGNLTNL QSLLLQDNNISGHIPSELGRLSKLKTIDLSSNNFSGQIPSALSNLNSLQYLRLNNNSLDGAIPASLVNMTQLTFLDLSYNDLSTPVPPVHAKTFNIVGNP LICGTEQGCAGTTPVPQSVALNNSQNSQPSGNNKSHKIALAFGSSLGCICLLVLGFGFILWWRQRHNQQIFFDVNEQHNEELNLGNLRSFQFKELQVATN NFSSKNLIGKGGFGNVYKGYLQDGTVVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVATRLKAKPALDWGTRK RIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGLRA LEFGKSTNQKGALLDWVKKIHQEKKLELLVDKDLKNNYDRIELEEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAEETRSRANEFSSSE RYSDLTDDSSLLVQAMELSGPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25560		NIK2	NSP-interacting kinase 2 (.1.2...		Potri.008G110300 [exp]	0	1
AT3G25560		NIK2	NSP-interacting kinase 2 (.1.2...		Potri.010G134100 [exp]	1.00	0.9416
AT3G24770		CLE41	CLAVATA3/ESR-RELATED 41 (.1)		Potri.002G241300 [exp]	1.41	0.9292
AT5G51350		MORE LATERAL GR...	MORE LATERAL GROWTH1, Leucine-...		Potri.018G113000 [exp]	1.73	0.9176
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G103100 [exp]	4.00	0.9121
AT4G29920			Double Clp-N motif-containing ...		Potri.006G073800 [exp]	4.47	0.8950
AT2G36540			Haloacid dehalogenase-like hyd...		Potri.010G244400 [exp]	6.00	0.8953
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102700 [exp]	7.34	0.9059
AT1G61600			Protein of unknown function (D...		Potri.004G106100 [exp]	7.41	0.8930
AT3G60720		PDLP8	plasmodesmata-located protein ...		Potri.014G067000 [exp]	9.89	0.9043
AT5G23100			Protein of unknown function, D...		Potri.012G058300 [exp]	10.19	0.9030

Compare expression of checked genes

Potri.008G110300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.