Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26190 932 / 0 Phosphoribulokinase / Uridine kinase family (.1) AT1G73980 856 / 0 Phosphoribulokinase / Uridine kinase family (.1) AT2G01460 223 / 2e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G40870 78 / 6e-15 UKL1, ATUK/UPRT1 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) AT1G55810 76 / 3e-14 UKL3 uridine kinase-like 3 (.1.2.3) AT4G26510 74 / 2e-13 UKL4 uridine kinase-like 4 (.1.2) AT3G27190 72 / 5e-13 UKL2 uridine kinase-like 2 (.1) AT3G27440 70 / 3e-12 UKL5 uridine kinase-like 5 (.1) AT1G32060 57 / 2e-08 PRK phosphoribulokinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134400 [exp] 1178 / 0 AT1G26190 968 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.015G055400 [exp] 900 / 0 AT1G73980 953 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.008G130200 [exp] 226 / 3e-63 AT2G01460 1337 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G111900 [exp] 220 / 4e-61 AT2G01460 1325 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G069600 [exp] 78 / 5e-15 AT5G40870 852 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.001G332100 [exp] 78 / 7e-15 AT5G40870 820 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Potri.017G071200 [exp] 77 / 1e-14 AT3G27440 707 / 0.0 uridine kinase-like 5 (.1) Potri.011G165100 [exp] 73 / 2e-13 AT4G26510 818 / 0.0 uridine kinase-like 4 (.1.2) Potri.001G467800 [exp] 73 / 2e-13 AT1G55810 809 / 0.0 uridine kinase-like 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030570 [exp] 947 / 0 AT1G26190 1018 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030919 [exp] 929 / 0 AT1G26190 1007 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009678 [exp] 880 / 0 AT1G73980 962 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009040 [exp] 877 / 0 AT1G73980 971 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10025598 [exp] 234 / 5e-66 AT2G01460 1419 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10027063 [exp] 230 / 2e-64 AT2G01460 1457 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041569 [exp] 79 / 3e-15 AT5G40870 853 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10035216 [exp] 79 / 4e-15 AT5G40870 850 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1) Lus10021310 [exp] 74 / 2e-13 AT4G26510 753 / 0.0 uridine kinase-like 4 (.1.2) Lus10016989 [exp] 73 / 3e-13 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00485 [poplar] [flax] PRK Phosphoribulokinase / Uridine kinase family CL0273 [poplar] [flax] CYTH PF01928 [poplar] [flax] CYTH CYTH domain
Representative CDS sequence Show only first row Show all	>Potri.008G110500.1 pacid=42808183 polypeptide=Potri.008G110500.1.p locus=Potri.008G110500 ID=Potri.008G110500.1.v4.1 annot-version=v4.1 ATGGCTAAAGATACTTCTGGTGCCGAATCACACCCAAAACGGCAGGGACTCTTGAAAGATCAAGCCAGATTAACTAAGAAAAAGGACTGTGATCGCTTTG AGATAGTCCCAATCCAAAATCCTTTGTCATTCGAGAAAGGATTCTTTATTGTTATCCGTGCCTGCCAATTGTTAGCACAAAATAATGATGGAATGATACT GGTAGGTATAGCAGGCCCTTCAGGAGCTGGGAAAACCATTTTCACTGAAAAAATTCTCAACTTCATGCCCAGTGTTGCCACCATATCGATGGACAACTAC AATGATTCAAGCCGAATTGTTGATGGCAATTTTGACGACCCGCGCTTGACGGACTATGACATGTTGCTCAAGAATGTTCTTGACTTAAAGGATGGGAAAC CAGTTGAGGTTCCAATCTATGATTTCAAGTCGAGCACCCGAACAGGATACAGGACACTCGAAGTACCATCTTCTCGTATAGTGATTATTGAAGGAATCTA TGCACTGAGTGAAAAGTTGCGACCTTTGTTAGACCTACGAGTATCTGTAACTGGGGGAGTTCATTTTGATCTTGTAAAACGGGTTTTAAGGGACATCCAA CGAGCTGGCCAAGAACCAGAGGAAATAATCCAGCAGATATCTGAAACGGTATATCCGATGTACAAGGCCTTTATTGAGCCAGATCTCAAAACAGCCCATA TAAAAATTACAAACAAGTTCAACCCCTTCTCTGGATTTCAAAGTCCTACTTATATATTAAAGTCAGCAAGGAAGGTAACAGTGGACCAGATCAAGCCTGT TCTCTCTGAAGATTATAAAGAGACAATGGAGCAGATTTATGACATATATCTTTTACCACCTGGTGAAGATCCAGAATCATGCCAATCATATTTGAGGATG CGAAATAAAGATGGAAAATACAATCTCATGTTTGAGGAATGGGTTGCAGATGCTCCATTTATCATATCACCAAGGATCACTTTTGAAGTCACTGTTAAAC TCCTCAGTGGGCTGATGGCCTTGGGATACACAATAGCTGCTATCCTTCAAAGAAGTAGCCATTCATTCTCTGATGATAGGGTGTGTGTGAAAATTGATTG GCTAGGACAACTAAATCGTCAATATGTTCAGGTGCAAGGAAGAGATCGCTTGGTTGTAAAATACATTGCAGAGCAGCTAGGTTTGGAAGGCTCATACACT CCACGTACCTATATAGAACAGATTCAACTAGAAAGGCTTGTAAATGAGGTCATGGCCTTGCCAGATGACTTGAAGACAAAGCTCAGCTTAGATGAGGATC TGGTTTCAAGCCCCAAAGAAGCACTTTTGCGAGCCTCTGCTGATAGGGTTGCCAGGAGATTTAAGAATGGCAAAAGCGGTATGTCACACTCATATTCCTC TCAAAGGGACAAGAACTTATCTAAGCTTACTGGGCCTGCTGCAACCTCTAATAGGTTTGATGATAGCAATCTAGAGTCACCAGCTGCGCTAGCCAATCAG GGAGCCATGACTCAACTTTCAGAACAGATTTCTTCACTAAATGATAGAATGGATGAGTTCACAACCTGTATTGAAGAGTTAAATTCCAAGTTAATCATCA ATAAGAACCCTCCTAGCCAACAAAATATGGCTCTCCAAGCTGAAGTGCACAATGGTTCTGCTCCAACTTCTTACTTCGTATCTGGTTTAGGCAACGGTTC CTTGACTGGATCCAGAATGTCCAATTCCTCATCTTCATCTCTGTTGGCTAAGGAGTCACCTTTAATGGAGGAGATATCAGGAATTGCCCGGGCACAGCGT CAAGTCACGCTTCAGTTGGATACGTTGAGCAATCTTCTTCGTGATAGCTTGGGAGAGAGGTTTCAGGGAGTAAGAAAAAACAGGAATATCTTGGCTGTCC GTGATGGCCAAGCTCCCCTTATTGTAGCATTGGCGATTGGTTGTGTCGGACTATGTTGGTTTATTCGAGCCCAGAATTGA
AA sequence Show only first row Show all	>Potri.008G110500.1 pacid=42808183 polypeptide=Potri.008G110500.1.p locus=Potri.008G110500 ID=Potri.008G110500.1.v4.1 annot-version=v4.1 MAKDTSGAESHPKRQGLLKDQARLTKKKDCDRFEIVPIQNPLSFEKGFFIVIRACQLLAQNNDGMILVGIAGPSGAGKTIFTEKILNFMPSVATISMDNY NDSSRIVDGNFDDPRLTDYDMLLKNVLDLKDGKPVEVPIYDFKSSTRTGYRTLEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQ RAGQEPEEIIQQISETVYPMYKAFIEPDLKTAHIKITNKFNPFSGFQSPTYILKSARKVTVDQIKPVLSEDYKETMEQIYDIYLLPPGEDPESCQSYLRM RNKDGKYNLMFEEWVADAPFIISPRITFEVTVKLLSGLMALGYTIAAILQRSSHSFSDDRVCVKIDWLGQLNRQYVQVQGRDRLVVKYIAEQLGLEGSYT PRTYIEQIQLERLVNEVMALPDDLKTKLSLDEDLVSSPKEALLRASADRVARRFKNGKSGMSHSYSSQRDKNLSKLTGPAATSNRFDDSNLESPAALANQ GAMTQLSEQISSLNDRMDEFTTCIEELNSKLIINKNPPSQQNMALQAEVHNGSAPTSYFVSGLGNGSLTGSRMSNSSSSSLLAKESPLMEEISGIARAQR QVTLQLDTLSNLLRDSLGERFQGVRKNRNILAVRDGQAPLIVALAIGCVGLCWFIRAQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26190			Phosphoribulokinase / Uridine ...		Potri.008G110500 [exp]	0	1
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.006G115800 [exp]	4.35	0.7210
AT2G45670			calcineurin B subunit-related ...		Potri.014G074300 [exp]	8.94	0.7387
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Potri.009G131900 [exp]	11.48	0.6969
AT4G17020			transcription factor-related (...		Potri.004G041600 [exp]	16.40	0.7772
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Potri.010G229400 [exp]	29.29	0.6693
AT3G29770		ATMES11	ARABIDOPSIS THALIANA METHYL ES...		Potri.017G096900 [exp]	29.52	0.7520
AT5G54830			DOMON domain-containing protei...		Potri.018G021000 [exp]	46.31	0.6366
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Potri.002G201500 [exp]	47.56	0.6420	ERS1.1,ETR1
AT3G43220			Phosphoinositide phosphatase f...		Potri.018G063700 [exp]	61.31	0.6634
AT1G78530			Protein kinase superfamily pro...		Potri.011G101900 [exp]	62.20	0.7302

Compare expression of checked genes

Potri.008G110500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.