Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68850 488 / 7e-175 Peroxidase superfamily protein (.1) AT4G36430 300 / 7e-101 Peroxidase superfamily protein (.1) AT2G18150 290 / 1e-96 Peroxidase superfamily protein (.1) AT5G05340 280 / 7e-93 Peroxidase superfamily protein (.1) AT3G50990 280 / 1e-92 Peroxidase superfamily protein (.1) AT1G44970 280 / 1e-92 Peroxidase superfamily protein (.1) AT2G18140 278 / 5e-92 Peroxidase superfamily protein (.1) AT5G58390 276 / 8e-92 Peroxidase superfamily protein (.1) AT5G19890 275 / 9e-91 Peroxidase superfamily protein (.1) AT5G06730 275 / 9e-91 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134500 [exp] 627 / 0 AT1G68850 459 / 2e-163 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 290 / 4e-97 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 289 / 4e-96 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.001G145800 [exp] 287 / 2e-95 AT2G35380 458 / 6e-163 Peroxidase superfamily protein (.1.2) Potri.007G019300 [exp] 283 / 5e-94 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 281 / 1e-93 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.005G118700 [exp] 281 / 2e-93 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1) Potri.003G214700 [exp] 280 / 1e-92 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.002G031200 [exp] 278 / 4e-92 AT1G44970 492 / 6e-176 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029094 [exp] 464 / 2e-165 AT1G68850 439 / 1e-155 Peroxidase superfamily protein (.1) Lus10013065 [exp] 461 / 7e-164 AT1G68850 431 / 2e-152 Peroxidase superfamily protein (.1) Lus10010634 [exp] 295 / 2e-98 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10041784 [exp] 284 / 2e-94 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10006534 [exp] 280 / 5e-93 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10024209 [exp] 278 / 6e-92 AT1G14550 432 / 3e-153 Peroxidase superfamily protein (.1) Lus10027989 [exp] 278 / 1e-91 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10032786 [exp] 272 / 5e-90 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10008167 [exp] 273 / 1e-89 AT5G06720 399 / 3e-139 peroxidase 2 (.1) Lus10034207 [exp] 270 / 6e-89 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.008G110600.2 pacid=42805755 polypeptide=Potri.008G110600.2.p locus=Potri.008G110600 ID=Potri.008G110600.2.v4.1 annot-version=v4.1 ATGGCGTTTCCTCTTCAAGAAATAAAGCTTCCCATATTACCATTTTCTATGTTGATTATCATCTCCATCCTCGGCAGAAGCTTGCATGCAAGCGACCCTC CTCTAACTTTAGACTACTATGCTCCCACCTGCCCCAGTGTGTTTGAGATTGTCAAGAAAGAGATGGAATGTGAAGTTATTTCTGATCCACGCAGTGCAGC TTTGATAGTTAGATTACATTTCCATGACTGTTTTGTTCAGGGATGTGATGGTTCAGTTTTGCTAGATGACACAATCACCCTGCAAGGGGAAAAGAAAGCT TCAACAAACATAAACTCTCTAGAAGGATTTAAAATCATTGATAGAATTAAGAACAAGATCGAGTCCGAGTGCCCCGGAATAGTGTCTTGTGCAGATATTC TCACCATTGCAGCAAGAGATGCAGTCCTTCTGGTTGGTGGACCATATTGGGATGTTCCTGTTGGAAGAAAAGATTCTAAAACTGCAAGTTTCGAGCTCGC GGCATCAAATATTCCAACAGCAGATGAGGGTCTGCTATCTATCATTACCAAGTTTCTTTACCAAGGCCTTTCTGTTACTGATTTGGTAGCTCTTTCAGGG GCGCACACTATTGGCATGGCACACTGTGCAAATTTTCGGGCGAGGATTTACGGGGACTTTGAAACAACTTCGGATAGAAGTCCAGTGTCTGAGACATATC TTAACAACTTGAAATCTATGTGCCCAGCTACAGGAGGAGGGGACAATAACATATCAGCAATGGACTATGTCACGCCTAATCTTTTCGACAACTCTTTCTA TCATTTACTATTGAAAGGAGATGGCCTGCTAAACTCAGACCAAGAACTGTACTCGAGCATACTCGGACTTGAAACAAAGAATCTTGTGATAAAGTATGCC CATGATCCAATTGCTTTCTTTTACCAATTCTCAGATTCCATGGTGAAAATGGGAAACATTACAAATCCTGATAGCTTTGTCGATGGAGAAATTAGGACGA ACTGCAGATTTGTGAACACATGA
AA sequence Show only first row Show all	>Potri.008G110600.2 pacid=42805755 polypeptide=Potri.008G110600.2.p locus=Potri.008G110600 ID=Potri.008G110600.2.v4.1 annot-version=v4.1 MAFPLQEIKLPILPFSMLIIISILGRSLHASDPPLTLDYYAPTCPSVFEIVKKEMECEVISDPRSAALIVRLHFHDCFVQGCDGSVLLDDTITLQGEKKA STNINSLEGFKIIDRIKNKIESECPGIVSCADILTIAARDAVLLVGGPYWDVPVGRKDSKTASFELAASNIPTADEGLLSIITKFLYQGLSVTDLVALSG AHTIGMAHCANFRARIYGDFETTSDRSPVSETYLNNLKSMCPATGGGDNNISAMDYVTPNLFDNSFYHLLLKGDGLLNSDQELYSSILGLETKNLVIKYA HDPIAFFYQFSDSMVKMGNITNPDSFVDGEIRTNCRFVNT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68850			Peroxidase superfamily protein...		Potri.008G110600 [exp]	0	1
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Potri.012G068700 [exp]	1.00	0.9921
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.013G048200 [exp]	2.44	0.9876
AT3G25640			Protein of unknown function, D...		Potri.008G114500 [exp]	3.00	0.9720
AT5G06090		ATGPAT7, GPAT7	glycerol-3-phosphate acyltrans...		Potri.008G058200 [exp]	3.46	0.9849
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Potri.014G080200 [exp]	4.00	0.9819
AT2G43390			unknown protein		Potri.007G130200 [exp]	5.29	0.9760
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Potri.012G056300 [exp]	5.47	0.9795
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.007G122100 [exp]	5.47	0.9637	SEPA1.1
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G021100 [exp]	5.65	0.9733
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Potri.005G164900 [exp]	5.74	0.9700

Compare expression of checked genes

Potri.008G110600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.