Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68740 1097 / 0 PHO1;H1 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 680 / 0 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) AT3G29060 414 / 1e-132 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 411 / 1e-131 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 399 / 9e-128 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 398 / 2e-127 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 398 / 5e-127 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 397 / 5e-127 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 388 / 2e-123 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 388 / 1e-122 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G132300 [exp] 1357 / 0 AT1G68740 1139 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G069000 [exp] 759 / 0 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G169400 [exp] 738 / 0 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G090400 [exp] 445 / 7e-145 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 422 / 6e-136 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 422 / 7e-136 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 422 / 9e-136 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 422 / 1e-135 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 366 / 6e-115 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019155 [exp] 1111 / 0 AT1G68740 1065 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10034400 [exp] 1110 / 0 AT1G68740 1057 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10021164 [exp] 760 / 0 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10011799 [exp] 748 / 0 AT3G23430 1080 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10030439 [exp] 414 / 1e-132 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 397 / 4e-126 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 397 / 4e-126 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 386 / 3e-122 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 383 / 3e-121 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 377 / 1e-118 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [poplar] [flax] SPX SPX domain CL0182 [poplar] [flax] IT PF03124 [poplar] [flax] EXS EXS family
Representative CDS sequence Show only first row Show all	>Potri.008G110800.1 pacid=42808424 polypeptide=Potri.008G110800.1.p locus=Potri.008G110800 ID=Potri.008G110800.1.v4.1 annot-version=v4.1 ATGGTGAAGTTTTCTAAGCAGTTTGAGGGTCAGCTTGTGCCTGAGTGGAAAGAGGCTTTTGTTGATTACTGGCAACTCAAGAAAGACCTGAAGAAAATCC ATCTCCTTAATAACAACAAGAAGAACACCCTCATCAAGCACAGTCATCATAACTCTTTGTCTAGCAACTTCCTTTCCTCTCTTAAGGGGGGGTTCTCTTT ATTTGGTCATCAACACAAGGACCATGAAGCCATTCATGTTCATAAGAAACTTGCATCTTCAGCTAGTAAAGGTGATGTGTACGAGACAGAACTGGTTGAG CAATTTGAGGATAGTGATGCTGCCAAAGAGTTTTTCTCATGTCTGGACTTGCAACTTAACAAAGTTAACCAGTTTTACAAGACTAAGGAGAAAGAGTTCT TGGATAGAGGGGATTGCTTGAAGAAACAAATGGATATTCTTGTAGAGCTCAAAGCTGCATTCAAACAACAGCGCGACAAAGTTGCTAATTCTGCTCAGGA TTCCACTGAGGATGCCTCTATTGATTGCAGAATCTCTTGTGAGGAAGATTCAGTGACAGACAGAATAGAACAAGAACAGATTCAGGACGACAGCACAGAT GACTTGGAGAAAAATGAAGTCCTAGACTCCCCAAGATCAGAAGAGATGGGAAAATCAACAAGGATCATGAAAAGAGAGGATAGGAAACTGAGGACACTTT CGGGCCGTGTTTTCAATTGCCAAGGGAAGAATTTAAGGATAAACATTCCTCTAACAACACCTTCTCGTACTTTCTCGGCGATCAGTTATCTAGTTTGGGG AGATTTGATTAATCAGTCCTCCAATAATTGCAACCCTGAAGGAAGCAAGCTGCGTATCAACAAAACAAAGTTGAATCATGCAGAGAAGATGATCAAAGGA GCTTTCATAGAGCTCTACAAAGGGTTGGGATATCTTGAAACTTACAGGAACTTGAACATGCTTGCTTTTGTAAAGATTTTGAAGAAATTCGATAAAGTAA CTGAAAAACAAGTACTTCCCATCTATCTAAAAGTTGTCGAAAGCTCCTATTTTAACAGTTCAGACAAGGTAATGAACTTAGCAGATGAAGTTGAGGATCT ATTTATCAAACATTTCGCTGAAGAAGACCGAAGAAAGGCCAGAAAATACCTCAAACCACATCAGCGTAAAGAATCACACTCTGTGACCTTTTTCATCGGA CTGTTCACCGGGAGCTTCATAGCCCTCCTTGTTGGTTATGTAATAATGGCTCGTATCACGGGGATGTACAGACAGCATCCAGATACAGCATACATGGAAA CTGTCTATCCTGTGCTTAGCATGTTCAGCTTGATGTTCCTGCACTTCTTTTTGTATGGTTGCAACATTTTAATGTGGAGGAAATCCAGGATAAATTATAG CTTCATCTTTGAGCTGGACCCCACAAAGGAGCTAAAGTACAGAGATGTATTCTTGATATGCACCACATCTATGACTGCTGTGGTGGGAGTCATGTTTATT CATTTGTCACTTCTTACGAAACGACATTCGTATTCCCAAGTTCAAGCCATCCCAGGCCTTCTGTTATTGAGCTTCCTGTTATTGCTTGTGTGCCCCTTCA ACATTTGCTACCGATCAAGTCGTTACAGCTTCCTTTGTGTGATAAGGAACATCGTTCTATCACCTCTCTACAAGGTTGTCATGCTGGACTTCTTCATGGC TGACCAGCTTTGTAGTCAGGTGCCAATGCTTCGGAACCTTGAGTATGTGGCATGCTATTATTTAACCGGGAGCTACAAAACTCAGGACTTTGGCTACTGC ATGAGGGCCAAGCATTACCGTGATCTTGCTTATGCAGTGTCCTTTATACCCTATTACTGGAGAGCAATGCAGTGTGCTAGGCGATGGTTTGACGAAGGAC AGATAAATCACCTTGTCAATCTAGGCAAATATGTATCAGCAATGTTAGCAGCAGGAGCCAAAGTGGCCTATGAGAGAGAAAAGAGTGTTGGATGGCTGTG CCTTCTTGTAGTTATCTCAAGCGCTGCAACAATTTACCAATTGTATTGGGACTTCGTAAAGGATTGGGGTTTACTCCAAATGAATTCCAAGAATCCCTGG CTAAGGAATGAATTAGTGCTTCGTCGAAAGTTCATTTACTACTTCTCCATGGGATTGAACCTTGTTCTCAGGCTTGCTTGGCTACAAACTGTTCTCCATT CAAATTTTGAACATGTTGATTATAGAGTAACTGGACTGTTTTTAGCTTCCCTTGAAGTCATTAGGAGAGGACAGTGGAATTTTTACAGGTTGGAGAATGA GCATCTAAATAATGCTGGCAAGTATAGAGCAGTCAAGACGGTGCCACTTCCTTTTCATGAAGTGGATGAAGAAGACTGA
AA sequence Show only first row Show all	>Potri.008G110800.1 pacid=42808424 polypeptide=Potri.008G110800.1.p locus=Potri.008G110800 ID=Potri.008G110800.1.v4.1 annot-version=v4.1 MVKFSKQFEGQLVPEWKEAFVDYWQLKKDLKKIHLLNNNKKNTLIKHSHHNSLSSNFLSSLKGGFSLFGHQHKDHEAIHVHKKLASSASKGDVYETELVE QFEDSDAAKEFFSCLDLQLNKVNQFYKTKEKEFLDRGDCLKKQMDILVELKAAFKQQRDKVANSAQDSTEDASIDCRISCEEDSVTDRIEQEQIQDDSTD DLEKNEVLDSPRSEEMGKSTRIMKREDRKLRTLSGRVFNCQGKNLRINIPLTTPSRTFSAISYLVWGDLINQSSNNCNPEGSKLRINKTKLNHAEKMIKG AFIELYKGLGYLETYRNLNMLAFVKILKKFDKVTEKQVLPIYLKVVESSYFNSSDKVMNLADEVEDLFIKHFAEEDRRKARKYLKPHQRKESHSVTFFIG LFTGSFIALLVGYVIMARITGMYRQHPDTAYMETVYPVLSMFSLMFLHFFLYGCNILMWRKSRINYSFIFELDPTKELKYRDVFLICTTSMTAVVGVMFI HLSLLTKRHSYSQVQAIPGLLLLSFLLLLVCPFNICYRSSRYSFLCVIRNIVLSPLYKVVMLDFFMADQLCSQVPMLRNLEYVACYYLTGSYKTQDFGYC MRAKHYRDLAYAVSFIPYYWRAMQCARRWFDEGQINHLVNLGKYVSAMLAAGAKVAYEREKSVGWLCLLVVISSAATIYQLYWDFVKDWGLLQMNSKNPW LRNELVLRRKFIYYFSMGLNLVLRLAWLQTVLHSNFEHVDYRVTGLFLASLEVIRRGQWNFYRLENEHLNNAGKYRAVKTVPLPFHEVDEED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Potri.008G110800 [exp]	0	1
AT5G06800	GARP		myb-like HTH transcriptional r...		Potri.006G191000 [exp]	2.82	0.8547
AT4G31240			protein kinase C-like zinc fin...		Potri.006G279400 [exp]	6.00	0.8502
AT2G18196			Heavy metal transport/detoxifi...		Potri.001G452400 [exp]	7.34	0.8235
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.005G060000 [exp]	8.48	0.8135
AT1G24577			unknown protein		Potri.006G159300 [exp]	9.00	0.8130
AT3G58720			RING/U-box superfamily protein...		Potri.014G139400 [exp]	10.24	0.8429
					Potri.012G085800 [exp]	13.11	0.8345
AT1G73040			Mannose-binding lectin superfa...		Potri.012G140001 [exp]	14.49	0.8144
AT1G53160	SBP	SPL4	squamosa promoter binding prot...		Potri.004G046700 [exp]	16.24	0.7995
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Potri.007G042900 [exp]	17.32	0.8107

Compare expression of checked genes

Potri.008G110800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.