Plant FIBer expression Database

Potri.008G111100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G68720 522 / 4e-162 ATTADA, TADA ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1)
AT5G28050 95 / 8e-22 Cytidine/deoxycytidylate deaminase family protein (.1.2)
AT1G48175 78 / 4e-16 TAD1, EMB2191 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1)
AT3G05300 69 / 2e-13 Cytidine/deoxycytidylate deaminase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G132600
[exp]
1809 / 0 AT1G68720 555 / 2e-174 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1)
Potri.005G049300
[exp]
81 / 4e-17 AT5G28050 281 / 4e-98 Cytidine/deoxycytidylate deaminase family protein (.1.2)
Potri.013G036000
[exp]
79 / 3e-16 AT5G28050 275 / 1e-95 Cytidine/deoxycytidylate deaminase family protein (.1.2)
Potri.010G003500
[exp]
79 / 3e-16 AT5G28050 267 / 2e-92 Cytidine/deoxycytidylate deaminase family protein (.1.2)
Potri.006G075300
[exp]
77 / 2e-15 AT1G48175 227 / 1e-76 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034402
[exp]
736 / 0 AT1G68720 436 / 2e-131 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1)
Lus10019153
[exp]
367 / 6e-107 AT1G68720 301 / 2e-84 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1)
Lus10028482
[exp]
80 / 1e-16 AT1G48175 269 / 5e-93 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1)
Lus10001791
[exp]
77 / 5e-16 AT5G28050 288 / 7e-101 Cytidine/deoxycytidylate deaminase family protein (.1.2)
Lus10015942
[exp]
76 / 2e-15 AT5G28050 288 / 3e-101 Cytidine/deoxycytidylate deaminase family protein (.1.2)
Lus10009163
[exp]
76 / 5e-15 AT1G48175 265 / 1e-91 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1)
Lus10016480
[exp]
47 / 0.0001 AT5G24670 392 / 4e-135 tRNA adenosine deaminase 3, EMBRYO DEFECTIVE 2820, Cytidine/deoxycytidylate deaminase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0109 CDA PF00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Representative CDS sequence
>Potri.008G111100.4 pacid=42808364 polypeptide=Potri.008G111100.4.p locus=Potri.008G111100 ID=Potri.008G111100.4.v4.1 annot-version=v4.1
ATGCATAACACTTACATTAGCTCAACTTTGTTGTCCGTGGGAACAAAAGGGTCACTTTCCTTTTCTTTCAATGACTACTCTAACTTATTAAGTGAAAGAT
TTGAAAGAAACCCATTTTTATTACAATCTTGTTCATCATCATGTAATAAATCTTGTTGTTGTTGTTGTTGTTGTTCTTGTTCTTGTTCTGCATCATCATC
ATCATTTTCTACTACCACTACTATACGTAGAGTGCCAATAAACCCAGGTTTGTTTTTTGGATTTAGACAATCTACTATTATTCAATGTCCGCCTTCTAGA
AGGTTGATCTTGGGCGGGAGGGATAGGTATTATTACCGGTCTCCGGCTTATGGTCTTGATCATGGTTGTTATGAGGATTCTTGCTCTTTTAAGGAGAAGA
ATGGGAGTGAGAGGGTTACTAGGAGAAGGGTGGGTGGGTCTGGGGGGGTAAGGTTGCACGGAAGGCGATGTTTTAGCGGGGTTGATGATGTGGAGGCCGT
AATTAGTTTGCTGAGTGAGGAAATGAGTGAAGAGTGTTTACGTGATGGGGAGAGAAATCAGGGCCTGTCAAAGAGAGTGGGAACGGAGAAGAGAGGAAAT
TACAGTGGTGGAGATCATAAGGGGAGGAGGAGGAAGAATGTTGGGCGTAGGTCTTTGGAGAGTGATACGAAATGTAAATTTGGGTTGGCTAATGTTGAGT
TGAGGAAGGAAGAGTTTACAAGGAAGGAAGGGAGTGAAGACAGGGAAGAAAAGAAAATAGTTTTAGAGGGGGAGAATTGCAGGGGAAAGAGAGGGAGCTC
TAGTGTTTCATCATATTACTCACTTTCTTCTGCTGAAGATTTTGAGAGTGACATGGAAGCTCAGGATGAACATGTTGATTGTCTCAAAGAATCATCGCAT
GGATACAAGGAGTTAAGAAGTGGAGAGGGTAGATTAAAGGGGCAAGTTGTAGAAGAGTTTAAGAGGCATAGAGATGGCACAGAGTGGAAGGGGGAGGTTT
TGGAAGCAAGAACTAGTTCAAGAAGGACTGGTGTTGAGTGGGATTTGAGGAAGAAATCTGAGAAGAAACTTACTGAGATTGAAGAAACACGATCAGGAAG
AGAATCCTTACAAATGCAATCAAGAATGGCAAGAACCACTGAAAGTGATTACAAGAATGTATCAGGTTCTCATAAGCAAATTGATGACGAGGAAGAGAAA
AGCTTGGCAGTTAATTTGGAGAAAGGAACAAGAAAGCAATATGGTCAGATGGGTGATCCCGTGAAAGAGCAATCTGAATTCAGAAGAAATTACCAGGAAA
TTACTAATAAACAGGAGAGCAGTGGAACAAATGTCGAAACAACTTCCCAATCCCAAAAGCGGTTCAGTGGTAGAGAAGAAAACCTAGTGGATGTAAATTT
GGTTTGGGAAGGAAGGGATGAGCGTTATGAAGTAGGTGAAACTGCTGCAGAAAACAATATAAAAAGAAACACTCACCAACTCATTGACACATCAACCCTT
GAGAATGTCAGAACTGAAAGAGTTTCAAATTTGCAGAGGCAATCCGAGCCTAGAATGAAGATTCTGGAAGAAGATAGAGCTCTGGGGTCATTTTATGAGA
CAAATGAGCAACAATTCCAAATGGGTGGGCAGACAAGAAGACAAGTTCAATCAAGATGTTTACAACAGTTATCTAAAATACCAGAAGTTCATGACAGTAG
TAGCAAAAACACTTTGCTTTTACAATCAGAAACTAGAATGAAGAAGCAGGAGGGACGTGAGAGTGTTGTTTCTAGTTCAGGTACAGAAGCAAAAGAGCAC
CAGCCTCGAACAAATCAAAAAGCTCTTCAGGGAACTGAAACCAGAAAAGGATCTGGAGATGTCACCAATATCTCTCTGAATGTCACTGGTGCATCACTGG
TCCATGCAAGTGATGTGAAAACAGTCACCAATTTTGGTGGAACTTCTGGAAAGAGAATCGTTGATCAGGAAAGTGAATCGACATCAGCTGTGGAACCCAT
TCGAGAAACAAGAGAGAGGACTGATAAAATTGAGGAAAATGTCACTCAATTCAAATCTAGAAATGAGGTTTGGAGGCCTACTTACGAATCAAGGCATAAT
GAAAGAACTTCACAGGAGGCTGCCTTAGATTCTCAAGCATCTGCTAATATGGTTTCTCAAGTGGGAATTCAAGAGGTTGATGTGGGGGAGGGCAATCAAA
GAACTTCACAGGCAATAATGATGCCTCCCCCACCTCAATTGTTAGCTCGAGGTACAGCATGTGTTAATCCGCCAAGTAAGAATGCAGACCAAGAGATTTC
CAGAGGAACTTCAGAAAGTGGTGCAAGTGCTCTGTATATAATTTCTGGAGGGGGAACTCCAGTTTTCCAGCAGGAAACATATGGTAAAAATGAGAAAGAT
GAGATTTACAGGGAGCCTTCAAATCTTATCTTAACTGGAGATGCTCTTGGTTCAACTCATCGTTTAGAGGAATCATCAATGCAGTTTGTTGGGGAGTTTG
TTGAGAAGGCTAGGCATGAAGTATTGGCTTCTGAAATCCAAAAGGAGAAGACAGTTTCTGATACAAAGTTGGCATATGAAGCTGAGAAGCAGAGGCAAAA
GAGTTCAGGTCAATATGATTCTGAAGACTTACAGTTTAAGAGGCAGGACTCAAGGCAATCATCTAGGGGCTCCAGAGAGAAGGGTCCCTCAGATGAAATG
TGGCATGTGACAGATCCATCCATTCAGGAACCTACAGAGACTGAAGCACCAGCAGGTAGCACAGAAACTGAGAGTGGTGTTGTTAGGAGAACTGGAAGGT
CCTTGTGGAGCATCATTTCGAATGTAGTACTATTGCGCTGGGGTTCACATGCTGAAACTCCTAAATCAGCTTGGAGATCAGGTGGAAAGAGTTCGTCAAA
TGATTCTGTTACTAGTGAGGCATGGTTTTCTGGCCACGAACCTGATGAAAACAGTGATGAGAACATGAAAAGGGAAAGGGAAAGCATGCCTAAGGAAGCT
GCCTCTTCTCACCAGCTGCAACCAACAAACACTTTTAGTCAAGATCAGGCAAAAGCATCTGACACATTTGTATCAAAGAACATAATAAGACAGCTTGAAG
GATACACTTCATCCCGGCCAATTATGCTAAAAAGCAAGTCCACATCAAAAGGCATTTCCACACCTTCTGAAGAGGAGAATCTTGGCTGGAGTCAAGATGG
GAACGATTTTCAAGTTGCTACATCTAGCACGGAAGTAGACGAATCATTACTAGTTTTATTGCCTTCTACTAGCACAAGTGATCCCATTGTGGAAGAAAGT
TCTGGTACTGCTAAAACTAATGTCTCTGTTAGTGGTTCAATGGAGCAACCTGATAGTGAAATGTTAATTGGAGTATCAGGCTCTGAGGGGAAGGGTGTGG
AGTCAAAACAAAGGAGGCTTCAGCGAAACAAGCAAGTTGAGAGAGACAGATTTGATGAATGGGAAGAGGCCTATTTACGTGAAAGTGAGCTGCGGAAAAC
TGATGAAATGTTTATGAGAGAAGCGCTGCTAGAAGCCAAGAAGGCTGCTGATTCTTGGGAGGTGCCTGTTGGGGCCGTGTTGGTGCATCATGGGAGGATT
ATTGCTCGTGGCCACAACCTAGTGGAGGAGTTACGAGACTCCACTGCCCATGCAGAAATGATTTGTATACGGGAAGCATCAAACAAACTCCGGACATGGA
GGCTTTCGGAGACTACACTTTATATAACACTTGAACCATGTCCTATGTGTGCTGGAGCAATACTTCAAGCAAGAATAAAAACTCTTGTATGGGGAGCTCC
CAATAAGCTTCTTGGAGCTGATGGAAGCTGGATTAGGCTTTTTCCTGATGCGGGAGAAGAAAATGGCTCAGAACTATCTAACAAGCCATCGGCTCCAGTC
CATCCTTTCCATCGAAAGATGACAATTCGGCGAGGAATATTGGAATCTGAGTGTGCAGATGTAATGCAGCAGTTCTTCCAGCTTAGGAGAAGGAAAAAGG
AGAAGAAAGAAGATTCCCCTCCTCAGCCTTCGTGTCTTCCCATAACAAATCCTCAATTGAAAATCCTTGGTAAGATGCATGGTTTCTTCCATGCCATGTT
CTGTTTGTAA
AA sequence
>Potri.008G111100.4 pacid=42808364 polypeptide=Potri.008G111100.4.p locus=Potri.008G111100 ID=Potri.008G111100.4.v4.1 annot-version=v4.1
MHNTYISSTLLSVGTKGSLSFSFNDYSNLLSERFERNPFLLQSCSSSCNKSCCCCCCCSCSCSASSSSFSTTTTIRRVPINPGLFFGFRQSTIIQCPPSR
RLILGGRDRYYYRSPAYGLDHGCYEDSCSFKEKNGSERVTRRRVGGSGGVRLHGRRCFSGVDDVEAVISLLSEEMSEECLRDGERNQGLSKRVGTEKRGN
YSGGDHKGRRRKNVGRRSLESDTKCKFGLANVELRKEEFTRKEGSEDREEKKIVLEGENCRGKRGSSSVSSYYSLSSAEDFESDMEAQDEHVDCLKESSH
GYKELRSGEGRLKGQVVEEFKRHRDGTEWKGEVLEARTSSRRTGVEWDLRKKSEKKLTEIEETRSGRESLQMQSRMARTTESDYKNVSGSHKQIDDEEEK
SLAVNLEKGTRKQYGQMGDPVKEQSEFRRNYQEITNKQESSGTNVETTSQSQKRFSGREENLVDVNLVWEGRDERYEVGETAAENNIKRNTHQLIDTSTL
ENVRTERVSNLQRQSEPRMKILEEDRALGSFYETNEQQFQMGGQTRRQVQSRCLQQLSKIPEVHDSSSKNTLLLQSETRMKKQEGRESVVSSSGTEAKEH
QPRTNQKALQGTETRKGSGDVTNISLNVTGASLVHASDVKTVTNFGGTSGKRIVDQESESTSAVEPIRETRERTDKIEENVTQFKSRNEVWRPTYESRHN
ERTSQEAALDSQASANMVSQVGIQEVDVGEGNQRTSQAIMMPPPPQLLARGTACVNPPSKNADQEISRGTSESGASALYIISGGGTPVFQQETYGKNEKD
EIYREPSNLILTGDALGSTHRLEESSMQFVGEFVEKARHEVLASEIQKEKTVSDTKLAYEAEKQRQKSSGQYDSEDLQFKRQDSRQSSRGSREKGPSDEM
WHVTDPSIQEPTETEAPAGSTETESGVVRRTGRSLWSIISNVVLLRWGSHAETPKSAWRSGGKSSSNDSVTSEAWFSGHEPDENSDENMKRERESMPKEA
ASSHQLQPTNTFSQDQAKASDTFVSKNIIRQLEGYTSSRPIMLKSKSTSKGISTPSEEENLGWSQDGNDFQVATSSTEVDESLLVLLPSTSTSDPIVEES
SGTAKTNVSVSGSMEQPDSEMLIGVSGSEGKGVESKQRRLQRNKQVERDRFDEWEEAYLRESELRKTDEMFMREALLEAKKAADSWEVPVGAVLVHHGRI
IARGHNLVEELRDSTAHAEMICIREASNKLRTWRLSETTLYITLEPCPMCAGAILQARIKTLVWGAPNKLLGADGSWIRLFPDAGEENGSELSNKPSAPV
HPFHRKMTIRRGILESECADVMQQFFQLRRRKKEKKEDSPPQPSCLPITNPQLKILGKMHGFFHAMFCL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G68720 ATTADA, TADA ARABIDOPSIS THALIANA TRNA ADEN... Potri.008G111100
[exp]
0 1
AT4G10600 RING/FYVE/PHD zinc finger supe... Potri.001G448900
[exp]
1.00 0.8969
AT2G39260 binding;RNA binding (.1) Potri.010G216100
[exp]
4.89 0.8388
AT5G08450 unknown protein Potri.018G145560
[exp]
5.47 0.8337
AT1G64570 DUO3 DUO POLLEN 3, Homeodomain-like... Potri.011G003500
[exp]
5.47 0.8448
AT1G44910 ATPRP40A pre-mRNA-processing protein 40... Potri.014G013100
[exp]
7.07 0.8469
AT3G10390 FLD FLOWERING LOCUS D, Flavin cont... Potri.010G227200
[exp]
11.74 0.7277
AT4G16310 LDL3 LSD1-like 3 (.1) Potri.002G027100
[exp]
12.72 0.8187
AT5G55660 DEK domain-containing chromati... Potri.001G367400
[exp]
18.13 0.8156
AT1G10320 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.004G228600
[exp]
18.33 0.8137
AT3G16620 ATTOC120 ARABIDOPSIS THALIANA TRANSLOCO... Potri.009G131200
[exp]
21.21 0.7910

Potri.008G111100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.