Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68710 1763 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G25610 1708 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 1705 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT1G13210 1703 / 0 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT3G27870 1537 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G17500 1362 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 1359 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 1348 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 1321 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 1024 / 0 ALA3 aminophospholipid ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G132700 [exp] 2355 / 0 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 1732 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 1496 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 1352 / 0 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 1350 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 1230 / 0 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 1012 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 996 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.006G109200 [exp] 677 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019152 [exp] 1788 / 0 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035069 [exp] 1699 / 0 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 1601 / 0 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 1548 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 1365 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008776 [exp] 1365 / 0 AT3G27870 1540 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008473 [exp] 1362 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 1351 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006017 [exp] 1301 / 0 AT1G17500 1851 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10013286 [exp] 1011 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase CL0137 [poplar] [flax] PF16209 [poplar] [flax] PhoLip_ATPase_N Phospholipid-translocating ATPase N-terminal CL0137 [poplar] [flax] PF16212 [poplar] [flax] PhoLip_ATPase_C Phospholipid-translocating P-type ATPase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.008G111200.2 pacid=42808811 polypeptide=Potri.008G111200.2.p locus=Potri.008G111200 ID=Potri.008G111200.2.v4.1 annot-version=v4.1 ATGGCTGGTGGTGGGAAAAGGAAGAGGTTGAGATTGAGCAAACTGTACTCGTTTGCATGTGGAAAGACATCTTTAAAGGGTGATCAGTCCCAGATGGGGT CACCTGGATTTTCAAGGGTAGTTCACTGCAATGAACCAGACTGTTTTGAGGCAAAGATTAGGAAATATAGTAGCAACTATGTTAGTACTACCAAGTATAA TGTTGCTACTTTCTTGCCCAAATCATTGTTTGAGCAGTTCAGAAGAGTGGCTAACTTCTATTTCTTGGTTGTGGGTGTCCTGGCCTTCACTCCTCTTGCA CCTTACACAGCTGTCAGTGCTATCTTCCCCCTTATTGTTGTTGTTGGAGCTACCATGGTTAAAGAAGGTATTGAAGATTGGAAGAGAGCTCAGCAGGATA TTGAGATGAACAGTAGAAAAACTAGACTGCACCAGGGTGATGGTACTTTCAAATCCACTGGATGGAAAAATCTGAGGGTGGGAGATATAGTGAAGGTGAA GAAGGATGAATACTTCCCAGCAGATCTCCTCTTGCTCTCATCAACTTATGATGATGGAATCTGCTATGTTGAGACCATGAATCTAGATGGAGAGACAAAT TTGAAACTGAAACAGGCATTGGAGTCAACTGCATTCATGCACGAGGACTCTTACTATCGGGATTTCAAGGCTCTTATCAAATGTGAGGATCCAAATACAA ATTTGTACTCATTCGTTGGAACTCTGGACTTTGAACAGAACCTGTATCCCCTGTCTCCTCAACGGCTTCTCCTCAGAGACTCAAAACTCAGAAATACGGA GTATATATATGGGGCAGTTATCTTCACTGGACATGACACTAAGGTTATGCAAAATTCTACAGCCCCCCCTTCGAAGAGAAGCAAATTTGAGAAGCAGATG GATAAAATTGTTTACTTCTTGTTCTTTGTTCTATTTATGATGGCATTTATTGGATCTCTTGTTTTTGGAGTTGCAACTGACAATGACTTGGATGGCCAGA GGATGAAAAGGTGGTATCTCAAACCAGATGAGTCTACGATTTACTTTGACCCTAAAAGAGTGGTCATGGCATCACTTTATCACTTTCTGACTGCTCTCAT GTTGTACAATTACTTCATCCCAATCTCCTTGTACGTGTCAATAGAAGTCGTCAAAGTTTTTCAGAGCAGTTTCATCAACAACGATATCAATTTGTACTAT GAGCCATCTGACAGGCCAGCACATTCTCGCACCTCAAATTTGAATGAGGAACTTGGGCAAGTGGACACAATACTTTCTGATAAGACCGGAACATTGACAT GCAATTCCATGGAGTTCATCAAGTGTTCTGTTGCGGGGACTGCTTATGGCCATGGGGTTACAGAGGCTGAACGGGGAATGGCTATGAGAGAAGGTGAAAG TGTGAATGGTTGGGATCAGAGCAAGGATTCTTCCAGTACAAAACCACATGTTAAAGGCTTTAATTTTAAAGATGAAAGGATTATGGATGGGAAGTGGGTC CATGAACCCCAAGCTCACATCATCGAAAAATTCTTCCGCTTGTTGGCAATCTGTCACACCGCCATACCTGATGTGGATGAAGAAACAGGGAAGATTTCAT ACGAAGCTGAATCACCAGATGAGGCAGCATTTGTGATTGCTGCAAGAGAAATTGGTTTTGAATTCTACAAAAGGACACAAACAAGCGTTGCAGTGCGTGA GTACAATCCAGAGACTGGTAGGAAAGTTGAAAGGGTGTATACAGTTTTGAATGTTTTGGAGTTTAACAGTGCAAGAAAGCGAATGTCTGTGATAGTAAGA AATGAGGAGGGAAAATTACTATTACTTAGTAAAGGAGCTGACAGTGTCATGTTTGAAAGGCTTGCTAAGAGTGGTAGGAAGTTTGAAGAGGAAACCAGGA ATCACGTGAATGACTATGCTGATTCTGGCCTGAGGACCCTCATACTTGCCTATCGTGAACTTGATGAAGAAGAGTACAGAATTTTTAACCAGAAATTCAC CGAGGCTAAGAATTCAGTTAATGCAGATCGGGAATCATTGATTGATGAAGTGGCAGAGAAGGTTGAGAGGAATCTAATTCTTCTTGGTGCAACTGCTGTT GAGGACAAACTCCAAGAAGGGGTTCCTGCCTGCATAGACAAACTTGCTCAAGCTGGAATTAAGATCTGGGTTTTGACTGGAGACAAAATGGAGACTGCCA TCAATATTGGCTTCTCCTGTTGTTTGCTTAGACAAGGAATGAAGCAGATCATAATCAATTTGGAGAATCCAGAGATCCTATCATTGGAAAAAACAGGAGA CAAGGATACCATTGCTAAGGCATCAAGGGAAAATGTTCTTCGTCAAATAACTGATGGAAAGGCTCTGCTTACTGGACCAAGTGGAACCGCTGAGATATTT GCATTGATAATTGATGGAAAATCACTTGCTTACGCATTGGAGGATGATATGAAGCATTTGTTTCTAGATCTTGCTATGAGTTGTGCTTCTGTGATTTGTT GCCGTTCATCACCAAAACAGAAAGCACTGGTTACGAGACTAGTCAAAATTGGAACCAGGAAAACAACATTAGCAATTGGTGATGGTGCCAATGACGTGGG TATGCTTCAAGAAGCAGATATTGGAGTTGGAATCAGTGGTGTTGAAGGCATGCAGGCTGCCATGGCAAGTGATGTCGCAATTGCTCAGTTTCGGTATTTG GAGCGTTTGCTACTCGTACATGGGCACTGGTGTTACAGGAGGCTCTCATCAATGATATGCTACTTCTTCTACAAGAACATTGCCTTTGGTTTCTCCATTT GGCTATATGAGGCATATACATCATTTTCCGCACAGTCTGTATACAGCGATTGGTTTTTGTCATTTTATAATGTCTTCTTCACGGCTCTTCCAGTTGCTGC TTTGGGTATCTTTGAACAGGATGTATCTGCTGCAAGCTGTCTCAAGTATCCTCTACTATACCAAGAAGGTGTGAAAAATCTCCTCTTTGGCTGGCGCCGA GTACTTCATTGGCTGGGTAATGGGTTCTACACTGCAATGGTCGTTTTCTTCTTCTGCACAAGTGCACTGCAGCACCAAGCCTTCACCCGTGATGGAAAAA CTGTTGGGATGGAAGTTTTAGGAGGCACTATGTATACTTGCATTGTGTGGGCTGTGAACTTGCAGATGGCACTGTCTGTTTGTTACTTCACCAAAATACA GCGTGGCCTAATTATATATTGTCTTTGTATGTTGTACATTTTCTTCTTGGCATTTGGGTCCCTGTCTCCATCAATGTCAAAAACTGCTTACAAACTCTTC ACAGAAGCCCTCGCCCCAGCTGCTTCGTACTGGTTTACAATCATATTTGTGATAATCGCAGCACTGTTGCCTTTCTATGCATATTCAGCAATTGAAACAA GGTTCTTTCCCATGTACCACCAGATGATACAAAGGTTAGAGAGTGGGAAACACGAAGATGATCCTGAGTACTGTGATATGATGCGACAAAGGTTATTGCG GCCACCAACATCAGTAGGTTTCTCAGCACGCTTGGCAGCACGAGCGAATAAGTTAAGACGCAAGAACAAGAATCAGCCACGATAA
AA sequence Show only first row Show all	>Potri.008G111200.2 pacid=42808811 polypeptide=Potri.008G111200.2.p locus=Potri.008G111200 ID=Potri.008G111200.2.v4.1 annot-version=v4.1 MAGGGKRKRLRLSKLYSFACGKTSLKGDQSQMGSPGFSRVVHCNEPDCFEAKIRKYSSNYVSTTKYNVATFLPKSLFEQFRRVANFYFLVVGVLAFTPLA PYTAVSAIFPLIVVVGATMVKEGIEDWKRAQQDIEMNSRKTRLHQGDGTFKSTGWKNLRVGDIVKVKKDEYFPADLLLLSSTYDDGICYVETMNLDGETN LKLKQALESTAFMHEDSYYRDFKALIKCEDPNTNLYSFVGTLDFEQNLYPLSPQRLLLRDSKLRNTEYIYGAVIFTGHDTKVMQNSTAPPSKRSKFEKQM DKIVYFLFFVLFMMAFIGSLVFGVATDNDLDGQRMKRWYLKPDESTIYFDPKRVVMASLYHFLTALMLYNYFIPISLYVSIEVVKVFQSSFINNDINLYY EPSDRPAHSRTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGHGVTEAERGMAMREGESVNGWDQSKDSSSTKPHVKGFNFKDERIMDGKWV HEPQAHIIEKFFRLLAICHTAIPDVDEETGKISYEAESPDEAAFVIAAREIGFEFYKRTQTSVAVREYNPETGRKVERVYTVLNVLEFNSARKRMSVIVR NEEGKLLLLSKGADSVMFERLAKSGRKFEEETRNHVNDYADSGLRTLILAYRELDEEEYRIFNQKFTEAKNSVNADRESLIDEVAEKVERNLILLGATAV EDKLQEGVPACIDKLAQAGIKIWVLTGDKMETAINIGFSCCLLRQGMKQIIINLENPEILSLEKTGDKDTIAKASRENVLRQITDGKALLTGPSGTAEIF ALIIDGKSLAYALEDDMKHLFLDLAMSCASVICCRSSPKQKALVTRLVKIGTRKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAAMASDVAIAQFRYL ERLLLVHGHWCYRRLSSMICYFFYKNIAFGFSIWLYEAYTSFSAQSVYSDWFLSFYNVFFTALPVAALGIFEQDVSAASCLKYPLLYQEGVKNLLFGWRR VLHWLGNGFYTAMVVFFFCTSALQHQAFTRDGKTVGMEVLGGTMYTCIVWAVNLQMALSVCYFTKIQRGLIIYCLCMLYIFFLAFGSLSPSMSKTAYKLF TEALAPAASYWFTIIFVIIAALLPFYAYSAIETRFFPMYHQMIQRLESGKHEDDPEYCDMMRQRLLRPPTSVGFSARLAARANKLRRKNKNQPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68710			ATPase E1-E2 type family prote...		Potri.008G111200 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.002G216800 [exp]	1.41	0.8215	Pt-RPM1.1
AT1G29690		CAD1	constitutively activated cell ...		Potri.004G064000 [exp]	1.73	0.8155
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.007G047400 [exp]	3.87	0.8346	WRKY15.1
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.010G173900 [exp]	6.00	0.7817
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.019G049700 [exp]	12.48	0.7567	PtrCSLD1,CESA3.2
AT1G20980	SBP	ATSPL14, SPL1R2...	squamosa promoter binding prot...		Potri.005G258700 [exp]	12.64	0.7931
AT2G24300			Calmodulin-binding protein (.1...		Potri.018G111200 [exp]	13.49	0.7968	Pt-CBP60.8
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Potri.011G131700 [exp]	14.00	0.7543
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.009G167400 [exp]	14.69	0.8049
AT5G66210		CPK28	calcium-dependent protein kina...		Potri.005G113600 [exp]	16.49	0.8155	CPK18

Compare expression of checked genes

Potri.008G111200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.