Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68690 622 / 0 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G26150 613 / 0 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT5G38560 563 / 0 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G70460 484 / 6e-162 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 477 / 8e-159 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT3G24550 470 / 4e-157 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G10620 465 / 3e-154 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT4G34440 442 / 6e-146 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT1G52290 434 / 8e-145 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G24540 424 / 5e-141 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G132900 [exp] 725 / 0 AT1G26150 605 / 0.0 proline-rich extensin-like receptor kinase 10 (.1) Potri.017G110400 [exp] 582 / 0 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 581 / 0 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 483 / 5e-161 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 476 / 5e-159 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.001G183000 [exp] 434 / 6e-144 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.005G124400 [exp] 430 / 2e-142 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.009G115200 [exp] 422 / 1e-138 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.003G053301 [exp] 419 / 4e-138 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017898 [exp] 582 / 0 AT1G68690 631 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10003066 [exp] 567 / 0 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10034082 [exp] 562 / 0 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10035071 [exp] 558 / 0 AT1G68690 570 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10029151 [exp] 468 / 3e-159 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10013014 [exp] 467 / 6e-159 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10011098 [exp] 470 / 4e-157 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10013013 [exp] 468 / 2e-154 AT1G70460 596 / 0.0 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) Lus10023645 [exp] 463 / 1e-153 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 457 / 4e-152 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.008G111600.1 pacid=42808532 polypeptide=Potri.008G111600.1.p locus=Potri.008G111600 ID=Potri.008G111600.1.v4.1 annot-version=v4.1 ATGGCAACTGTATCTCCATCCCCAAATTCACCCCCCCTGGCTGTTTCATCACCTTCAAACAGTACACCACCCCCGCCATCCACTACTAGCTCATCGCCGC CAGCCTCCTCTCCTCCTCCTCCTACTTCCCCATCTTCACAGCCCAATGCCAATCCACCAAACCCAAGAAACCCTTCAACTCCACCCCCGCCACCTCAACC CGCTCCTCCCGCTCTTTCAAATCCTCCTCCTGCCACACCACTAACCCCTCCACCCACGACATCGCAATCTCCACCTTTATCCGGTAGTGCACCCAACTCC AATTCTCCTCCACCACCATCAGCAACTCCGCCTGTGAGCTCACCCCCACCCCCACCACCACCCTCATCTAATCCACCTTCAATTTCACCTCCACCACCAC TGGTGAATCCACCTACAAGTTCCCCTCCACCACCATCATCAATACCACCACCTCAAAGTTTACCACCACCACCATCATCAATACCACCACCTCAAAGTTT ACCACCACCATCAACACCGCCACTTCAGAGTTCACCTCCACCACCACCCTCATCAAGGCCACCTCAAAATTCACCACCACCGCCTCCTCCAACCCCATCA CAACTGCCTACCAATCCTCCCCCACCACCAGCATCTGTCTCACCTCCTCGAAGATCACCTCCACCGCCAGCATCGACTCCACCTGAGAATTCACCACCTC CACCAGCATCAATAGCCCCTCTTCCCAGTAATGTGCCGCCACCTCCTATGCTTACTCCTCCAACTGCAACTGCTCCTCTACCACCACCTGTCCCATCATA TTCTACTCCACCAGCATTGTCACCACCAACAATAAGATTGTCTCCACCTCCACCCTCACTTGTTTCCCCGCCATCACCCACGAACAATACTGCCCCTAAT TCACCCGAGAGTTCAAACTCCACAGGTAATGGGGGCATTGGTATTGGAGGTATAGTGGCTATTGGTGCAGCAATAGGAATTATAATGCTCATCCTCGTTG GATTGGCTCTCTGGTGCATGAGGAAGCAGCGAAAAGAGATTTCTGGACTGAATGGTGTTTATGTTATGCCATCTTCTTTGGGCTCTTCTCCAAGATCAGG TTCAACTTTCACAAAGACTCAGTCTACAGCTCCCCTAATAGCAAGTGGTTCTAGCAGTGATTGTTTTTCTTTGCCACCTGAATCAAGTGGGTTAGGTAAT TCAGGGCCTTTGTTTGCGTTTGAAGAGCTAGTCAAGGCGACAAATGGGTTTTCATCCCAAAACCTTTTGGGAGAAGGTGGATTTGGTACTGTATATAAAG GTTACCTACCAGATGGGAGAGACGTGGCAGTGAAACAGCTGAAAATTGGTGGAGGGCAAGGTGAGCGAGAATTTAAAGCTGAAGTCGAGATTATTAGTCG TATACACCATCGCCATTTGGTTTCACTTGTGGGCTACTGCATATCTGAGACCCGAAGATTGCTCGTATATGATTATGTCCCTAACAATACCCTTCATTTC CATCTTCATGAGGTGGGTAGGCCAGCTCTGGACTGGGCAACACGTGTTAAGATTGCTGCTGGTGCAGCTCGGGGGTTAGCTTATCTCCATGAAGATTGTC ACCCTCGGATTATTCACAGGGATATTAAGTCGTCAAACATTCTTTTAGATATCAACTTCGAAGCTAAGGTTTCAGACTTTGGGCTTGCCAAATTAGCTCT CGATACAAACACTCATGTAACAACGCGTGTTATGGGAACCTTTGGATACATGGCCCCTGAATACGCATCAAGTGGCAAATTAACAGATAAATCTGATGTG TTCTCTTATGGAGTTGTGCTTCTGGAGCTAATCACTGGACGGAAGCCTGTGGATGCATCGCAGCCCGTGGGAGACGAGAGTCTTGTTGAATGGGCTCGAC CTTTGCTAAATCATGCACTAGAAAATGAGGAATTTGAAAGCTTGGCAGATCCACGGCTTGAAAAGAATTACATTGAAAGTGAAATGTTCCAGATGATTGA GGCTGCTGCAGTCTGTGTGCGGCATTCAGCTACTAAGAGGCCACGGATGGGACAGGTTGTTAGAGCTTTCCATACCTTGGCAAATGCTGATCTAACCAAT GGAATGAGAGTAGGAGAAAGTGAGTTATTTAACTCTGCACAACAATCTGAAGAAATCAGACTATTTCGAAGGATGGCATTTGGTAGTCAAAATTACAGTA CAGATTTTTTTAGCCCGGATACTTAA
AA sequence Show only first row Show all	>Potri.008G111600.1 pacid=42808532 polypeptide=Potri.008G111600.1.p locus=Potri.008G111600 ID=Potri.008G111600.1.v4.1 annot-version=v4.1 MATVSPSPNSPPLAVSSPSNSTPPPPSTTSSSPPASSPPPPTSPSSQPNANPPNPRNPSTPPPPPQPAPPALSNPPPATPLTPPPTTSQSPPLSGSAPNS NSPPPPSATPPVSSPPPPPPPSSNPPSISPPPPLVNPPTSSPPPPSSIPPPQSLPPPPSSIPPPQSLPPPSTPPLQSSPPPPPSSRPPQNSPPPPPPTPS QLPTNPPPPPASVSPPRRSPPPPASTPPENSPPPPASIAPLPSNVPPPPMLTPPTATAPLPPPVPSYSTPPALSPPTIRLSPPPPSLVSPPSPTNNTAPN SPESSNSTGNGGIGIGGIVAIGAAIGIIMLILVGLALWCMRKQRKEISGLNGVYVMPSSLGSSPRSGSTFTKTQSTAPLIASGSSSDCFSLPPESSGLGN SGPLFAFEELVKATNGFSSQNLLGEGGFGTVYKGYLPDGRDVAVKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCISETRRLLVYDYVPNNTLHF HLHEVGRPALDWATRVKIAAGAARGLAYLHEDCHPRIIHRDIKSSNILLDINFEAKVSDFGLAKLALDTNTHVTTRVMGTFGYMAPEYASSGKLTDKSDV FSYGVVLLELITGRKPVDASQPVGDESLVEWARPLLNHALENEEFESLADPRLEKNYIESEMFQMIEAAAVCVRHSATKRPRMGQVVRAFHTLANADLTN GMRVGESELFNSAQQSEEIRLFRRMAFGSQNYSTDFFSPDT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Potri.008G111600 [exp]	0	1
AT1G21660			Chaperone DnaJ-domain superfam...		Potri.005G181700 [exp]	3.16	0.7169
AT1G19270		DA1	DA1 (.1)		Potri.002G132700 [exp]	4.00	0.7097
AT3G30300			O-fucosyltransferase family pr...		Potri.017G101600 [exp]	12.84	0.6738
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Potri.002G113066 [exp]	16.97	0.6859
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.018G075900 [exp]	18.49	0.7119
AT3G19300			Protein kinase superfamily pro...		Potri.009G100400 [exp]	19.97	0.6908
AT5G40100			Disease resistance protein (TI...		Potri.006G283700 [exp]	20.39	0.6583
AT3G14470			NB-ARC domain-containing disea...		Potri.003G200200 [exp]	33.94	0.6615
AT3G11320			Nucleotide-sugar transporter f...		Potri.008G063400 [exp]	34.64	0.6299
AT3G22430			unknown protein		Potri.009G147201 [exp]	37.49	0.6089

Compare expression of checked genes

Potri.008G111600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.