Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26160 353 / 7e-124 Metal-dependent phosphohydrolase (.1) AT2G23820 265 / 4e-89 Metal-dependent phosphohydrolase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G178600 [exp] 280 / 2e-95 AT2G23820 305 / 2e-105 Metal-dependent phosphohydrolase (.1.2) Potri.010G133101 [exp] 91 / 2e-23 AT1G26160 82 / 8e-21 Metal-dependent phosphohydrolase (.1) Potri.010G133001 [exp] 90 / 4e-23 AT1G26160 84 / 2e-21 Metal-dependent phosphohydrolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017897 [exp] 348 / 6e-122 AT1G26160 329 / 2e-114 Metal-dependent phosphohydrolase (.1) Lus10035072 [exp] 333 / 1e-115 AT1G26160 319 / 5e-110 Metal-dependent phosphohydrolase (.1) Lus10015497 [exp] 284 / 8e-97 AT2G23820 331 / 2e-115 Metal-dependent phosphohydrolase (.1.2) Lus10019968 [exp] 281 / 2e-95 AT2G23820 332 / 1e-115 Metal-dependent phosphohydrolase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0237 [poplar] [flax] HD_PDEase PF01966 [poplar] [flax] HD HD domain
Representative CDS sequence Show only first row Show all	>Potri.008G111700.1 pacid=42807965 polypeptide=Potri.008G111700.1.p locus=Potri.008G111700 ID=Potri.008G111700.1.v4.1 annot-version=v4.1 ATGACTGTTAATGCACCGACTCACTGCGCTCTTCCACCGATTCGCACCCTACCAACTCGCTCCTCTCTTTCTTTCTTTAAACGGAGACAGCCCATTTTCT TAAACGAAGCTCCAAACCCGAGAATCGTTTTAGTTCGCTGCGATAAGCTTAATTCGGATGGGCTAGGACCCATGAGATCCGTTGTGGAGACCGAATCTGT GTCGGGTAACTCATCAGCGTCATCGGCTATTGATTTCCTCACATTGTGCCATCGATTGAAGACCACAAAACGCAAGGGATGGATCAACCATGGGATAAAG GGTCCTGAATCAATTGCTGACCATATGTACCGCATGTCATTGATGGCGCTGATTGTTGGGGACCTCCCTGGTGTGAATCGAGAAAGGTGTATAAAGATTG CGATTGTGCATGATATTGCTGAAGCTATTGTTGGAGATATAACACCATCAGATGGTGTGCCTAAACAAGAAAAGAGTAGAATGGAGCAAGCGGCTTTAAA TGAAATGTGCGAAGTTCTTGGTGGAGGAATGAGGGCTGAAGAGATCAAAGAGTTATGGGCGGAGTATGAAAACAATGCTTCCTTGGAGGCCAACCTTGTC AAAGACTTTGACAAAGTTGAGATGATTTTGCAAGCTTTGGAATATGAAATGGAACACGGGAAGGTGTTGGATGAGTTTTTCCTTTCGACAGCAGGGAAAT TTCAAACTGAGATAGGAAAGAACTGGGCAGCTGAGATTGCCTCAAGAAGAAAATCTACACCGGCCAAAAAGCAAAACTGA
AA sequence Show only first row Show all	>Potri.008G111700.1 pacid=42807965 polypeptide=Potri.008G111700.1.p locus=Potri.008G111700 ID=Potri.008G111700.1.v4.1 annot-version=v4.1 MTVNAPTHCALPPIRTLPTRSSLSFFKRRQPIFLNEAPNPRIVLVRCDKLNSDGLGPMRSVVETESVSGNSSASSAIDFLTLCHRLKTTKRKGWINHGIK GPESIADHMYRMSLMALIVGDLPGVNRERCIKIAIVHDIAEAIVGDITPSDGVPKQEKSRMEQAALNEMCEVLGGGMRAEEIKELWAEYENNASLEANLV KDFDKVEMILQALEYEMEHGKVLDEFFLSTAGKFQTEIGKNWAAEIASRRKSTPAKKQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26160			Metal-dependent phosphohydrola...		Potri.008G111700 [exp]	0	1
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Potri.009G077800 [exp]	5.47	0.7010
AT5G16320		FRL1	FRIGIDA like 1 (.1)		Potri.002G206200 [exp]	23.32	0.6054	Pt-FRL1.1
AT1G24360			NAD(P)-binding Rossmann-fold s...		Potri.008G178700 [exp]	24.39	0.6501
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Potri.002G149500 [exp]	26.38	0.6629	Pt-DHDPS2.1
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Potri.003G043700 [exp]	34.29	0.6409
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Potri.003G181200 [exp]	40.69	0.6474
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.006G265300 [exp]	63.62	0.6223
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Potri.006G267800 [exp]	101.02	0.5818	ARF1.8
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.016G048100 [exp]	137.29	0.5809
AT2G29960		CYP19-4, ATCYP5...	CYCLOPHILIN 19-4, ARABIDOPSIS ...		Potri.009G046500 [exp]	187.97	0.5434	Pt-CYP5.3

Compare expression of checked genes

Potri.008G111700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.