Plant FIBer expression Database

Potri.008G111800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G03810 84 / 2e-17 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
AT5G60880 44 / 0.0001 BASL breaking of asymmetry in the stomatal lineage (.1.2)
AT1G13650 44 / 0.0001 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G138100
[exp]
621 / 0 AT2G03810 93 / 3e-20 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Potri.015G048400
[exp]
58 / 5e-09 AT2G03810 64 / 6e-11 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026682
[exp]
105 / 2e-24 AT2G03810 100 / 9e-23 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Lus10004632
[exp]
100 / 5e-23 AT2G03810 102 / 3e-24 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Lus10036829
[exp]
79 / 2e-15 AT2G03810 97 / 7e-22 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
Lus10019193
[exp]
54 / 2e-07 AT2G03810 50 / 1e-06 18S pre-ribosomal assembly protein gar2-related (.1.2.3.4)
PFAM info
Representative CDS sequence
>Potri.008G111800.4 pacid=42807142 polypeptide=Potri.008G111800.4.p locus=Potri.008G111800 ID=Potri.008G111800.4.v4.1 annot-version=v4.1
ATGAGCCACGAGCCTGATTCTAGACCTGTTGAATATAATGACAATGCTCTGGATTCCATTGGACTCAAGTCTGGAAATGGGTCTGTGAAGGAAATTGAGA
ATGGAAAGTTCAGTGATTTGAACGGCATGGAAGGTGATGCAGATCGATTACCGAATGTAGCACCAGTACCATCTCCTCATTCTTCACTGAAAATGGAACC
ATTCGAGGAGTCGGTTTTCTATATGGACAAGAGTGTTATGGTACGTGAGGTGCCAGAGTTAATAGTTTGTTACAAAGAGAATACATACCATGTCAAGGAC
ATCTGTGTTGATGAGGGAGTTCCTTTGCAGGACAAGTTCTTGTTTGACACAGATGCACACAAGAAGAATATGTGTGAATTCTTACCTTCTGAAAGGGACA
TGAACAATGAGATGGTCAAAGAAAAGTCTGACCTTGATATGCTGATTCCAGAAATGCTGAAATCTTCATCAGAAAAACAAAATGTGGATCTTCATTTGCC
TGTTCCGGATGTGCTTATATCTTCCGAAGAAAAGGGTTCGAAACATGATCTGTCCCTTGATTGTGATCCCAAACATTTAATGCCGACAGAGGAAGTAATG
GATTATGGGACAAAGAAGGTTACAGATAATGCTTCCAAAGAGATTTTATCACTGAGAGATCTGCTTTCGATGTCAGAATTAGGTGCCAAGTGTACCCCAG
CCAATGCTTCCTATCACAACATGGATAAAGTTGAACAACAATCTCTTCTGTGCCCGAGGGAAAATGCAATATTGGAGACAGATTCTGCCAGTGAAGAATC
TGAACATTGCGGCGAGGAAACAATCTCGGACAATGGCCTTGAGTCAGCAACCCTGGCAATCCCTACCCAGGATCCTGCATATCAAGAAGGAGACCATGGC
CACACGGAAGCAGTCTTGGTGAGTCCCACTCTTACTTCTGCAGCAGAAGAATCGGATAGCAAGGAAACAAAATTGGCAAGCCATGCTTTGGATTCTTTTT
CTGAAGGATCGACCAGTAGGATCGAGGATGAGTTACCTTACAATAGCAAGACAGAGACACGAAGCATCAGTTTTGACAATGATTCTTCTGCTCCCGCTGC
AAGTGCGAGAGAGTCTCCTCAGAATGGTGAATCTCAGCGTCTTGGGACTCGAATTGTGTCCAGGTTTGAAGATCCTAATGCTGAACGGCTTTCAGGTGGT
CAACTTCAATATGCTGATGGAGAGTCAAGTTTCTCTTCATCGGGTCCTTTATTTGGCCTGACAAGTCACTCGGGCCCTATTGCATATTCTGGTAGTGTCT
CTCTTAGATCGGATAGCAGCACAACCAGCACCCGCTCTTTTGCCTTCCCCATATTACAGTCAGAATGGAATAGCAGTCCTGCAAGAATGGCAAAAGCTGA
CCGAAGACATTTCCAGAAACCTAGGAAGTGGATGCAGGGCCTTCTTTGCTGTAGATTCTGA
AA sequence
>Potri.008G111800.4 pacid=42807142 polypeptide=Potri.008G111800.4.p locus=Potri.008G111800 ID=Potri.008G111800.4.v4.1 annot-version=v4.1
MSHEPDSRPVEYNDNALDSIGLKSGNGSVKEIENGKFSDLNGMEGDADRLPNVAPVPSPHSSLKMEPFEESVFYMDKSVMVREVPELIVCYKENTYHVKD
ICVDEGVPLQDKFLFDTDAHKKNMCEFLPSERDMNNEMVKEKSDLDMLIPEMLKSSSEKQNVDLHLPVPDVLISSEEKGSKHDLSLDCDPKHLMPTEEVM
DYGTKKVTDNASKEILSLRDLLSMSELGAKCTPANASYHNMDKVEQQSLLCPRENAILETDSASEESEHCGEETISDNGLESATLAIPTQDPAYQEGDHG
HTEAVLVSPTLTSAAEESDSKETKLASHALDSFSEGSTSRIEDELPYNSKTETRSISFDNDSSAPAASARESPQNGESQRLGTRIVSRFEDPNAERLSGG
QLQYADGESSFSSSGPLFGLTSHSGPIAYSGSVSLRSDSSTTSTRSFAFPILQSEWNSSPARMAKADRRHFQKPRKWMQGLLCCRF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G03810 18S pre-ribosomal assembly pro... Potri.008G111800
[exp]
0 1
AT1G47890 AtRLP7 receptor like protein 7 (.1) Potri.016G120600
[exp]
1.41 0.8677
AT1G70530 CRK3 cysteine-rich RLK (RECEPTOR-li... Potri.010G043900
[exp]
10.19 0.8553
AT1G19850 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic ac... Potri.005G236700
[exp]
10.24 0.8313
AT1G74360 Leucine-rich repeat protein ki... Potri.015G061600
[exp]
10.81 0.8553
AT4G06536 SPla/RYanodine receptor (SPRY)... Potri.014G025000
[exp]
11.18 0.8484
AT2G39220 PLP6, PLAIIB ,P... PATATIN-like protein 6 (.1) Potri.008G040500
[exp]
11.31 0.8262
AT3G11840 PUB24 plant U-box 24 (.1) Potri.006G202700
[exp]
15.49 0.8160
AT1G05280 Protein of unknown function (D... Potri.017G039600
[exp]
18.57 0.8116
AT4G36988 CPuORF49 conserved peptide upstream ope... Potri.007G043850
[exp]
25.78 0.7870
AT4G36990 HSF AT-HSFB1, ATHSF... ARABIDOPSIS THALIANA HEAT SHOC... Potri.007G043800
[exp]
27.22 0.7737

Potri.008G111800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.