Plant FIBer expression Database

Potri.008G111900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G69030 281 / 6e-94 BSD domain-containing protein (.1)
AT1G26300 274 / 2e-91 BSD domain-containing protein (.1.2)
AT3G24820 120 / 6e-33 BSD domain-containing protein (.1)
AT5G65910 49 / 2e-06 BSD domain-containing protein (.1)
AT3G49800 49 / 2e-06 BSD domain-containing protein (.1)
AT1G10720 41 / 0.0007 BSD domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G137900
[exp]
405 / 5e-143 AT1G26300 241 / 2e-78 BSD domain-containing protein (.1.2)
Potri.002G242200
[exp]
131 / 2e-37 AT3G24820 167 / 4e-53 BSD domain-containing protein (.1)
Potri.014G008400
[exp]
56 / 1e-08 AT3G49800 332 / 1e-109 BSD domain-containing protein (.1)
Potri.007G006400
[exp]
55 / 3e-08 AT3G49800 288 / 1e-93 BSD domain-containing protein (.1)
Potri.014G014200
[exp]
46 / 3e-05 AT1G10720 223 / 6e-68 BSD domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036831
[exp]
343 / 2e-118 AT1G26300 305 / 2e-103 BSD domain-containing protein (.1.2)
Lus10019194
[exp]
342 / 7e-118 AT1G26300 294 / 8e-99 BSD domain-containing protein (.1.2)
Lus10025929
[exp]
111 / 3e-29 AT3G24820 161 / 2e-50 BSD domain-containing protein (.1)
Lus10038170
[exp]
107 / 4e-28 AT3G24820 162 / 3e-51 BSD domain-containing protein (.1)
Lus10011556
[exp]
52 / 2e-07 AT3G49800 372 / 3e-126 BSD domain-containing protein (.1)
Lus10019271
[exp]
52 / 3e-07 AT3G49800 370 / 3e-125 BSD domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03909 BSD BSD domain
Representative CDS sequence
>Potri.008G111900.1 pacid=42806394 polypeptide=Potri.008G111900.1.p locus=Potri.008G111900 ID=Potri.008G111900.1.v4.1 annot-version=v4.1
ATGGAAGACTTCTGGAAGAGAGCGAAGGTATTCGCAGAAGAAGCAGCGAAGAAATCCCAAACCTTTACAACTTCTTCCAACACAATCGCCGATTTAGTCA
CTGAAACCGCCAAGAAATCCAAAGAACTTGCCTTGGAAGCTTCCAAAAGGGCCGATCAGCTCAAAATAGCCGCTCTTAAACAAGCCGATTCGATCCAATT
CAAGTCCATTTCCGATATTATCCCTCCTCAGCTATCCTCTCTCTCCATCGTCAATACTAATGCCTTCTCCTCTGCTTCTTCTTCGGGTTCTGGTCCTGTT
GTCTCCGATTCGGAGCTCCGGGAGTTTGGTGTTACTGATGATTTGAGAGATTTTGTTAAAGGATTAACTTCTAGTACCTTCCAGAACTTTCCAATTCAAG
ATGAAGGAGAGCCATCTGATGTGGAGACAACGGAGTCAAATGTACGCAAGGATCTCAGTGAATGGCAGGAGAGGCATGCCACTCTTGTTCTCACCACTGT
TAAGCAAATTTCGAAGTTGCGATATGAGCTATGTCCGCGTGTGATGAAAGAAAGGAGATTCTGGAGGATTTATTTCACGCTTGTCAGCACTCATGTGGCG
ACGTACGAGAAGCAGTATACGGAGGAGGTTAAGCGTAAAGCAGAAGAGCAGATGAAAGATGAAAAGGCAAAGGAAAGTTCAGGGGTTGGGGAGAATTCTT
CCAAATCAGAATCAACAGAAAAGAGCCTGAAAAGTAAGGCATCCTCAGATGAGCAGGAGTTGGACTCGTTTCTTTTGGGAGATATTGAAGACAGTGATGG
TGGTCCAGATGACGGTGATGTGAGCTTTGATGATGATTTTGACAAGATTGGCAATTCTGATATTGAAGATGAGAAACATTCGAAGAAGGGCACAGGTACT
ACAAGTTAG
AA sequence
>Potri.008G111900.1 pacid=42806394 polypeptide=Potri.008G111900.1.p locus=Potri.008G111900 ID=Potri.008G111900.1.v4.1 annot-version=v4.1
MEDFWKRAKVFAEEAAKKSQTFTTSSNTIADLVTETAKKSKELALEASKRADQLKIAALKQADSIQFKSISDIIPPQLSSLSIVNTNAFSSASSSGSGPV
VSDSELREFGVTDDLRDFVKGLTSSTFQNFPIQDEGEPSDVETTESNVRKDLSEWQERHATLVLTTVKQISKLRYELCPRVMKERRFWRIYFTLVSTHVA
TYEKQYTEEVKRKAEEQMKDEKAKESSGVGENSSKSESTEKSLKSKASSDEQELDSFLLGDIEDSDGGPDDGDVSFDDDFDKIGNSDIEDEKHSKKGTGT
TS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G69030 BSD domain-containing protein ... Potri.008G111900
[exp]
0 1
AT5G58700 ATPLC4 phosphatidylinositol-speciwc p... Potri.001G252100
[exp]
1.73 0.7008
AT4G37100 Pyridoxal phosphate (PLP)-depe... Potri.015G097000
[exp]
6.00 0.6828
AT3G23000 PKS7, ATSRPK1, ... SNF1-RELATED PROTEIN KINASE 3.... Potri.008G160200
[exp]
7.61 0.6980 CIPK4.1
AT5G67020 unknown protein Potri.005G138300
[exp]
10.24 0.6192
Potri.010G080501
[exp]
15.16 0.6699
Potri.001G439825
[exp]
25.21 0.6945
AT3G05290 AtPNC1, PNC1 peroxisomal adenine nucleotide... Potri.005G033800
[exp]
27.16 0.5568
AT4G12040 AtSAP7 stress-associated protein 7, A... Potri.001G115000
[exp]
29.93 0.6521
AT4G02485 2-oxoglutarate (2OG) and Fe(II... Potri.014G131200
[exp]
30.00 0.6297
AT1G52320 unknown protein Potri.003G054800
[exp]
30.98 0.6073

Potri.008G111900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.