Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69010 292 / 5e-98 bHLH bHLH102, BIM2 BES1-interacting Myc-like protein 2 (.1) AT5G38860 179 / 3e-54 bHLH bHLH141, BIM3 BES1-interacting Myc-like protein 3 (.1) AT5G08130 162 / 2e-46 bHLH BIM1, bHLH046 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT5G67110 56 / 7e-09 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G63650 56 / 2e-08 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G41315 56 / 2e-08 bHLH MYC6.2, GL3 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G09530 54 / 5e-08 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT4G36930 54 / 5e-08 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00050 54 / 7e-08 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G34530 52 / 2e-07 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G137600 [exp] 509 / 0 AT1G69010 325 / 4e-111 BES1-interacting Myc-like protein 2 (.1) Potri.015G048000 [exp] 262 / 1e-82 AT5G08130 359 / 3e-117 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.012G065000 [exp] 255 / 2e-80 AT5G08130 352 / 7e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.017G101700 [exp] 217 / 1e-68 AT1G69010 184 / 5e-56 BES1-interacting Myc-like protein 2 (.1) Potri.004G112900 [exp] 217 / 2e-68 AT1G69010 186 / 1e-56 BES1-interacting Myc-like protein 2 (.1) Potri.002G124400 [exp] 57 / 5e-09 AT4G36930 154 / 6e-44 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G025800 [exp] 56 / 9e-09 AT4G36930 148 / 1e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G054100 [exp] 57 / 1e-08 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G208600 [exp] 56 / 2e-08 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026684 [exp] 306 / 1e-103 AT1G69010 276 / 6e-92 BES1-interacting Myc-like protein 2 (.1) Lus10004630 [exp] 291 / 2e-97 AT1G69010 257 / 2e-84 BES1-interacting Myc-like protein 2 (.1) Lus10034358 [exp] 166 / 2e-48 AT1G69010 168 / 1e-49 BES1-interacting Myc-like protein 2 (.1) Lus10007974 [exp] 155 / 7e-43 AT5G08130 330 / 1e-106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10013502 [exp] 154 / 2e-42 AT5G08130 330 / 6e-107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10005091 [exp] 142 / 2e-38 AT1G69010 149 / 5e-41 BES1-interacting Myc-like protein 2 (.1) Lus10042572 [exp] 56 / 4e-09 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024811 [exp] 57 / 5e-09 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018724 [exp] 52 / 1e-07 AT4G36930 126 / 2e-34 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10028175 [exp] 53 / 2e-07 AT4G00050 232 / 2e-71 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G112000.2 pacid=42808130 polypeptide=Potri.008G112000.2.p locus=Potri.008G112000 ID=Potri.008G112000.2.v4.1 annot-version=v4.1 ATGAGAGGAAAAGGGAATCAAAATCAAGTCGAGGAAGAGTACGAGGAAGATGAGTTTGGTTCTAGAAAAGATGGGCCGTCTTCAAGTTTTACAGTGAACA ACAATAATTCCAGTAAAGATGGGAAGAATAGTGACAGGGCTAATGCAATAAGATCGAAACATTCCGTCACTGAGCAGCGAAGAAGGAGCAAGATCAATGA GAGATTTCAGATATTGAGAGATCTTATTCCTCATAGTGATCAAAAGAGAGACACGGCATCGTTTTTATTAGAGGTCATTGAATATGTCCAGCATTTACAG GAAAAGGTGCAAAAGTATGAGGGTCCATACCAGGGATGGAGCCCTGAGCCAGCAAAGTTGATGCCATGGAGAAACAGCCACTGGCACCTTCAAAGTTCTG TCGGTCACCCTCAAGCTATTAAAAATGGTTATGTTCCAGGAGAAACATTTCCAGGTAAACTTGATGAGAATAACATTGCTCTCACACCAGCCATGCTTCC AAGCACACCGAATCTAGTAGAATCCGACCATGTTGCTTGCAAAGTGTTGGAACACCAACCTGAGCTAGGAAACAAGGCTATGCCTCTTCCCACGCCTGCT CCCATTCGAAGTGTTGGACTTGTTGCTCACCCCTGTCAACTACCAGTCTCTGATGCTCAATCAGCTGAGTGTCCCATCACCAGTGAAATGTTGAACCAGC AGGAGCTGGCAATTGAAGCAGGGACAATCAATATCTCCAGTGTTTACTCTCAAGAGTTGCTGAATACTCTTACGCAATCGCTGCAGAGTGCTGGTGTAGA TCTATCACAAGCTAACATCTCAGTTCAGATTGATCTCGGAAAACGGGCAAATAGAGGGCTGACCTCTGGTACATTGACATCTAAGGATCCCCAGAATCCC CATCCTACCAATGAAATGATAACCCACCTTAGGGATGCAAGTGGAGGAGAGGATTCAGATCAAGCTCAAAAGCGGCTAAAGACATCGTAA
AA sequence Show only first row Show all	>Potri.008G112000.2 pacid=42808130 polypeptide=Potri.008G112000.2.p locus=Potri.008G112000 ID=Potri.008G112000.2.v4.1 annot-version=v4.1 MRGKGNQNQVEEEYEEDEFGSRKDGPSSSFTVNNNNSSKDGKNSDRANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQHLQ EKVQKYEGPYQGWSPEPAKLMPWRNSHWHLQSSVGHPQAIKNGYVPGETFPGKLDENNIALTPAMLPSTPNLVESDHVACKVLEHQPELGNKAMPLPTPA PIRSVGLVAHPCQLPVSDAQSAECPITSEMLNQQELAIEAGTINISSVYSQELLNTLTQSLQSAGVDLSQANISVQIDLGKRANRGLTSGTLTSKDPQNP HPTNEMITHLRDASGGEDSDQAQKRLKTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Potri.008G112000 [exp]	0	1
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.011G058100 [exp]	2.44	0.5723
AT4G38240		GNTI, CGL1	N-ACETYLGLUCOSAMINYLTRANSFERAS...		Potri.009G168000 [exp]	3.00	0.6155	CGL1.3
AT3G57890			Tubulin binding cofactor C dom...		Potri.006G059100 [exp]	11.13	0.5734
AT4G12340			copper ion binding (.1)		Potri.003G114200 [exp]	14.69	0.5091
AT2G26210			Ankyrin repeat family protein ...		Potri.018G047000 [exp]	20.19	0.5667
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Potri.009G150000 [exp]	36.46	0.5358
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.002G004000 [exp]	38.15	0.5247	Pt-HMG1.3
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Potri.019G068700 [exp]	52.53	0.4984
AT3G11920			glutaredoxin-related (.1)		Potri.008G144800 [exp]	73.08	0.4716
AT3G66654			Cyclophilin-like peptidyl-prol...		Potri.010G144500 [exp]	121.72	0.4593

Compare expression of checked genes

Potri.008G112000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.