Plant FIBer expression Database

Potri.008G112066 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G137500
[exp]
154 / 2e-48 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G112066.1 pacid=42808606 polypeptide=Potri.008G112066.1.p locus=Potri.008G112066 ID=Potri.008G112066.1.v4.1 annot-version=v4.1
ATGCCCCTCCAACGCCCCAATTTTATGAGACTATTGAACTGCTTCTCTGCTACTAGCACTCTGTTAATCTTACTACCCTTTCTTCTTCCTTGTATTTTCT
TTGGCTTCGTTTTCATTATATTTCTTTTCGTTTTAATTTTACCATTCTTGTGTAGCTTTATATCCTCTTGCCTCATCTTTAAGGTTGTATTTCTAGAAAT
GAAGCATATCCCATTTTTTGGGACGAAATTTGGAACCACTAGGTCCAGGACTGTTGGAGGAGACTCAAAGTATTATAAGATTGCTGATCATGAAAAGGTC
GATGATCTGGGCCTCAAAGATAAGGAAGGTAGCTTTATGGTAGACCCTAGTTTGGAGCTTCCATCTTTCGATGAATCTGAAGAGGAGAAACACAAAAAAC
AAGAAGATCATCCTGAGGTGGATGGAAGAGAGAACCTGTGCAAGTATGAGGAGGACTCTTGGCAAATTCTGGTACCAAAATCTTGTACCAAAAAGGAAGA
ACACAAGACGTTTTTTGAACTCCTGTCCTTTTGGAGAAAGAAAGAGAAGGAGAGATATAGAAGATATTTGAATTAA
AA sequence
>Potri.008G112066.1 pacid=42808606 polypeptide=Potri.008G112066.1.p locus=Potri.008G112066 ID=Potri.008G112066.1.v4.1 annot-version=v4.1
MPLQRPNFMRLLNCFSATSTLLILLPFLLPCIFFGFVFIIFLFVLILPFLCSFISSCLIFKVVFLEMKHIPFFGTKFGTTRSRTVGGDSKYYKIADHEKV
DDLGLKDKEGSFMVDPSLELPSFDESEEEKHKKQEDHPEVDGRENLCKYEEDSWQILVPKSCTKKEEHKTFFELLSFWRKKEKERYRRYLN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.008G112066
[exp]
0 1
AT3G45140 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGE... Potri.001G015500
[exp]
18.60 0.8059
AT3G45140 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGE... Potri.001G015601
[exp]
27.22 0.8028
Potri.002G169350
[exp]
31.62 0.7900
AT4G08850 Leucine-rich repeat receptor-l... Potri.012G124300
[exp]
31.96 0.7819
AT4G21380 ARK3 receptor kinase 3 (.1) Potri.019G120300
[exp]
34.20 0.7971
AT3G48940 Remorin family protein (.1) Potri.012G140900
[exp]
38.70 0.7929
AT1G31930 XLG3 extra-large GTP-binding protei... Potri.003G098200
[exp]
43.08 0.6757
AT2G29940 ABCG31, PDR3, A... ATP-binding cassette G31, plei... Potri.009G045601
[exp]
64.03 0.7699
AT5G14180 MPL1 Myzus persicae-induced lipase ... Potri.014G159800
[exp]
72.97 0.7671
AT4G03500 Ankyrin repeat family protein ... Potri.019G108801
[exp]
79.94 0.7282

Potri.008G112066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.