Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03890 866 / 0 UBDKGAMMA7, ATPI4KGAMMA7 ,PI4K GAMMA 7 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) AT1G26270 839 / 0 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT1G13640 810 / 0 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT2G40850 360 / 4e-117 ATPI4KGAMMA1 ,PI4K GAMMA 1 phosphoinositide 4-kinase gamma 1 (.1) AT3G56600 358 / 2e-116 Protein kinase superfamily protein (.1.2) AT2G46500 220 / 1e-63 UBDKGAMMA4, ATPI4KGAMMA4 ,PI4K GAMMA 4 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) AT5G24240 218 / 6e-63 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) AT1G64460 201 / 3e-59 Protein kinase superfamily protein (.1) AT1G27570 63 / 5e-10 phosphatidylinositol 3- and 4-kinase family protein (.1.2) AT3G43950 45 / 6e-05 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G137400 [exp] 1097 / 0 AT2G03890 917 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.017G101500 [exp] 700 / 0 AT2G03890 737 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.006G031600 [exp] 368 / 7e-120 AT2G40850 489 / 2e-168 phosphoinositide 4-kinase gamma 1 (.1) Potri.015G013600 [exp] 229 / 2e-66 AT5G24240 747 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.012G014600 [exp] 228 / 3e-66 AT5G24240 767 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.001G090300 [exp] 211 / 3e-60 AT2G46500 699 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.014G099000 [exp] 211 / 6e-60 AT2G46500 784 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019197 [exp] 913 / 0 AT2G03890 873 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10036834 [exp] 910 / 0 AT2G03890 874 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10005095 [exp] 668 / 0 AT2G03890 700 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10018104 [exp] 226 / 6e-66 AT5G24240 689 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10030251 [exp] 214 / 6e-64 AT2G46500 484 / 3e-170 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10004005 [exp] 213 / 2e-63 AT2G46500 483 / 1e-169 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10022411 [exp] 219 / 4e-63 AT5G24240 731 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10003190 [exp] 208 / 1e-59 AT2G46500 587 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10001817 [exp] 208 / 5e-59 AT2G46500 665 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10000011 [exp] 116 / 4e-30 AT1G26270 122 / 5e-33 Phosphatidylinositol 3- and 4-kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00454 [poplar] [flax] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Potri.008G112200.1 pacid=42806729 polypeptide=Potri.008G112200.1.p locus=Potri.008G112200 ID=Potri.008G112200.1.v4.1 annot-version=v4.1 ATGTCTCCTAAATTGGACAGCCCAGTTCAAACACAGATGGCACTGGCAGTCTTTAAGAGCCCACTTGGCGGGGAATACCACGGAAGCCAAAGAATGGAAG GGAAACAACCTGCTGTGAGGAGACGGGTTTTTGTGCAAACTGAGACTGGTTGTGTCTTGGGGATGGACTTGGATCGCAGTGACAATGCTCATACAGTGAA AAGAAGGCTGCAGATTGCACTTAATGTTCCAACCGAAGAGAGTTCCTTGACTTTTGGGGATATGGTGCTGAAGAATGACCTTAGTGCTGTTCGTAATGAT TCACCTCTTCTCTTAACACGGAACTTTCTTCATAGAAGCTCATCCACGCCCTGTCTTTCACCGACTGGAAGAGACACCCAACAGAGAGACCAAAGTAGTC CTATTGAGATATTGGGACACTCAAATAGCTTTGCTAAGGTGAGACAATCGGTCAAGGAAAGCATCAAGGCAATTAAGAATGGTGTTGATCCACTTCCAGT TCATAGCGGCCTCGGAGGTGCATACTACTTTAGAAACAGCAGAGGTCAGAGTGTTGCCATTGTGAAGCCAACTGATGAAGAACCTTTTGCGCCAAACAAT CCAAAAGGTTTTGTTGGCAAAGCTCTCGGGCAACCAGGTCTGAAACGGTCTGTGCGTGTTGGGGAGACAGGGTTCAGGGAAGTGGCAGCATTCCTTCTTG ACCATGACCACTTTGCTAATGTGCCCCCTACTGCACTTGTGAAGATCACTCACTCAATCTTCAATGTCAATGATGGGGTGAATGGCAATAAGCCACACAA GAAGAAGCAGGTCAGCAAGATTGCATCTTTCCAGCAGTTCATTCCACATGATTTTGACGCCAGTGATCATGGGACTTCAAGTTTCCCAGTTACTGCTGTG CATCGAATCGGGATTTTAGACATTAGAATTCTTAACACAGACAGGCATGGTGGAAACCTTTTGGTGAGGAAGCTTGACGGTGTCGGGAGATTTGGGCAAG TAGAGCTGATTCCAATTGATCACGGGCTTTGCTTGCCAGAAACATTGGAGGATCCGTACTTCGAGTGGATTCATTGGCCTCAGGCTTCGATTCCGTTCTC AGATGACGAACTTGAGTATATTGAAAAACTTGAACCAGGCAAAGATTGTGATATGCTGCGGATGGAGCTCCCAACGATCAGAGATGCTTGTCTACGGGTC CTGGTTCTCTGCACAATTTTTCTCAAGGAAGCTGCCTCCTCTGGTCTCTGTCTTGCTGAAATTGGTGAGATGATGAGCAGGGAGTTCCGTGCTGGGGAGG AGGAACCCAGTGAGCTTGAGGCTGTGTGCATTGAGGCAAGGAGGTTAATAGCTGAGAGGGAGGTGTTTTCTCCCCGGGGTTATTTGGGAGATGATCAGGA TTTCCAATTTGATTTAGACTGTGATGAAACACATTATGACTTCACCCCAAAGCTAACAGCAGATGACTACCTGACTAGGTCACCATTCCAATTTGGAATT GGATCTGGGAGTGGTCGCTTCCTGCTTTCCAAATTGGAGGAAAGCATTGAGGAAGAGGAAAGTGAAGGGGAGGAAGAGCAGGAGTGTTTTACTGCCCTGC GCACTCCTGAAAAATTCCCAACCATTTCAAAACTTTCCATGTCACTGAAGAGTAGTACCACATTAGGTGACAAGAACCAGAAGTTCTCAGGAACAAAACC AGAAACTGGCTATCTTAGTAATAGATCATCTGGTCACAGGAGCGCTAACGAGCAGCTCCCTGCGAGTATGAGTTTTGTGGAGCTGGCAGATATGACCGAG GAGGAATGGACCCTGTTTATGGAGAAATTTCAGGAACTGCTGTACCCAGCATTTGCCAAACGCAAATCTGTTACCTTTGGTCAGAGGCAGAGACAGAGAC AGAGGCTTGGTACTTCATGCCAGTTTTGA
AA sequence Show only first row Show all	>Potri.008G112200.1 pacid=42806729 polypeptide=Potri.008G112200.1.p locus=Potri.008G112200 ID=Potri.008G112200.1.v4.1 annot-version=v4.1 MSPKLDSPVQTQMALAVFKSPLGGEYHGSQRMEGKQPAVRRRVFVQTETGCVLGMDLDRSDNAHTVKRRLQIALNVPTEESSLTFGDMVLKNDLSAVRND SPLLLTRNFLHRSSSTPCLSPTGRDTQQRDQSSPIEILGHSNSFAKVRQSVKESIKAIKNGVDPLPVHSGLGGAYYFRNSRGQSVAIVKPTDEEPFAPNN PKGFVGKALGQPGLKRSVRVGETGFREVAAFLLDHDHFANVPPTALVKITHSIFNVNDGVNGNKPHKKKQVSKIASFQQFIPHDFDASDHGTSSFPVTAV HRIGILDIRILNTDRHGGNLLVRKLDGVGRFGQVELIPIDHGLCLPETLEDPYFEWIHWPQASIPFSDDELEYIEKLEPGKDCDMLRMELPTIRDACLRV LVLCTIFLKEAASSGLCLAEIGEMMSREFRAGEEEPSELEAVCIEARRLIAEREVFSPRGYLGDDQDFQFDLDCDETHYDFTPKLTADDYLTRSPFQFGI GSGSGRFLLSKLEESIEEEESEGEEEQECFTALRTPEKFPTISKLSMSLKSSTTLGDKNQKFSGTKPETGYLSNRSSGHRSANEQLPASMSFVELADMTE EEWTLFMEKFQELLYPAFAKRKSVTFGQRQRQRQRLGTSCQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.008G112200 [exp]	0	1
AT1G18470			Transmembrane Fragile-X-F-asso...		Potri.015G050300 [exp]	1.00	0.7992
AT4G27450			Aluminium induced protein with...		Potri.011G122100 [exp]	2.64	0.7038
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Potri.014G023500 [exp]	3.00	0.7004
AT1G09250	bHLH	bHLH149, AIF4	basic helix-loop-helix (bHLH) ...		Potri.005G012400 [exp]	3.46	0.7452
AT1G47740			PPPDE putative thiol peptidase...		Potri.002G134200 [exp]	3.74	0.6861
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Potri.002G133700 [exp]	6.48	0.7249	BES1.2
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Potri.018G058600 [exp]	6.63	0.7368
AT3G61980			serine protease inhibitor, Kaz...		Potri.014G108700 [exp]	8.60	0.7510
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.019G127500 [exp]	10.48	0.6646	Pt-CIPK2.1
AT5G10860		CBSX3	CBS domain containing protein ...		Potri.017G000100 [exp]	10.95	0.6744

Compare expression of checked genes

Potri.008G112200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.