Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30380 458 / 2e-161 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G14390 399 / 2e-138 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 394 / 1e-136 alpha/beta-Hydrolases superfamily protein (.1) AT1G13610 394 / 2e-136 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G24760 392 / 6e-136 alpha/beta-Hydrolases superfamily protein (.1) AT5G38220 338 / 4e-115 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT4G31020 311 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G66900 309 / 2e-104 alpha/beta-Hydrolases superfamily protein (.1) AT2G24320 307 / 2e-103 alpha/beta-Hydrolases superfamily protein (.1) AT1G32190 277 / 8e-90 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136900 [exp] 669 / 0 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G112300 [exp] 486 / 2e-172 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 470 / 7e-166 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G340000 [exp] 421 / 4e-147 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087100 [exp] 415 / 1e-144 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G090800 [exp] 415 / 1e-144 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G117633 [exp] 353 / 1e-120 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.004G097300 [exp] 347 / 2e-118 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.006G188100 [exp] 312 / 3e-105 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035148 [exp] 482 / 5e-171 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 475 / 5e-168 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036842 [exp] 419 / 1e-145 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10022307 [exp] 401 / 1e-138 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10042075 [exp] 389 / 3e-134 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10018081 [exp] 392 / 2e-128 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10000544 [exp] 357 / 7e-122 AT3G01690 488 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10033575 [exp] 327 / 3e-110 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10017617 [exp] 325 / 2e-109 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10040038 [exp] 318 / 2e-107 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.008G112600.1 pacid=42808846 polypeptide=Potri.008G112600.1.p locus=Potri.008G112600 ID=Potri.008G112600.1.v4.1 annot-version=v4.1 ATGGGGGTAGCAACATCATCCATGGCAGCAAAATTTGCTTTCTTTCCACCAAATCCACCATCTTACACCATATTAGTGGATGAAGAAACCGGAAAACTTA GGCTCTCATCAGATACACTCCACCAGAGGTACAACGTGGATGTTTTGAGATTATGTACCAAGAAAGGCAATGAGATTGTTGCCATGTATGCGAAGAATCC ATCAGCTTCATTGACAGTGTTGTATTCTCATGGCAATGCTGCTGATATTGGCCAGATGTATCATATTTTCACTGAGCTTAGCTTGCATCTCAATGTTAAT CTTATGGGGTATGATTATTCTGGCTATGGACAGTCTTCTGGAAAGCCAAGTGAGCAAGACACGTATGCTGATATAGAGGCTGCATTTAAATGCCTTGAAG AGACATATGGAGTGAAGGAGGAAGACATTATATTGTATGGCCAGTCGTTAGGGAGTGGACCTGCTCTTGAATTGGCTACTTGTTTGCCTGAATTAAGGGC TGTTATTCTTCACAGTCCTATCCTGTCTGGCCTTCGAGTCATGCATCCTATCAAGAAAACATTCTGGTTCGACATTTACAAGAATATTGATAAAATCCCG CTAGTCAACTGCCCAGTTCTTGTAATTCATGGAACAGAAGACGAAGTTGTGAATTTCTCTCATGGGAAGCAGCTCTGGGAGCTTTGCAAAGAGAAGTATG AGCCATTGTGGCTTAAAGGAGGAAACCACTGCAATCTGGAACTCTACCCAGAATACTTGAAGCATCTCAAGAAGTTCATATGTGCCATCGAAAAATTGCA GCCGCGTCTTAGAAATGTATCGGCCCAAAGTACTGATCAACCTGAACAACCCTTGAATACTGCAGAACACAATGCGGAGAAGCCAAGGCCAAGCACAGAT CATAAAGAGAAGGCAAGGCCTAGTATTGGACACAGAGAAAAATCCAGGCTAAGCACAGACAGTAGAGAGAAAGCAAGAGCCAGCACTGACAGAAGAGAAA GGGCACGAAAGAGCATTGATCGCATGGGCAAAGCAAGAAATAGCACGGATCAGCCAGAGAAAGCTAGGAACAGCTTCGACCGGTTGGGAGACATGGTGAG GTCTGTTGGATTGTGCAATGTTGATTGTCTGAAGCAGACAGCTGCCGAGGCCTGA
AA sequence Show only first row Show all	>Potri.008G112600.1 pacid=42808846 polypeptide=Potri.008G112600.1.p locus=Potri.008G112600 ID=Potri.008G112600.1.v4.1 annot-version=v4.1 MGVATSSMAAKFAFFPPNPPSYTILVDEETGKLRLSSDTLHQRYNVDVLRLCTKKGNEIVAMYAKNPSASLTVLYSHGNAADIGQMYHIFTELSLHLNVN LMGYDYSGYGQSSGKPSEQDTYADIEAAFKCLEETYGVKEEDIILYGQSLGSGPALELATCLPELRAVILHSPILSGLRVMHPIKKTFWFDIYKNIDKIP LVNCPVLVIHGTEDEVVNFSHGKQLWELCKEKYEPLWLKGGNHCNLELYPEYLKHLKKFICAIEKLQPRLRNVSAQSTDQPEQPLNTAEHNAEKPRPSTD HKEKARPSIGHREKSRLSTDSREKARASTDRRERARKSIDRMGKARNSTDQPEKARNSFDRLGDMVRSVGLCNVDCLKQTAAEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.008G112600 [exp]	0	1
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Potri.002G129800 [exp]	1.41	0.8173
AT5G48800			Phototropic-responsive NPH3 fa...		Potri.002G242300 [exp]	1.73	0.8210
AT5G50150			Protein of Unknown Function (D...		Potri.012G088300 [exp]	2.82	0.8001
AT2G01990			unknown protein		Potri.008G140900 [exp]	3.16	0.7821
AT5G17410			Spc97 / Spc98 family of spindl...		Potri.010G180700 [exp]	6.32	0.7563
AT4G34660			SH3 domain-containing protein ...		Potri.001G128800 [exp]	9.89	0.7053
AT1G45207			Remorin family protein (.2)		Potri.014G027900 [exp]	12.00	0.8082
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Potri.007G028000 [exp]	12.40	0.7619
AT4G07400		VFB3	VIER F-box proteine 3 (.1)		Potri.006G081600 [exp]	14.49	0.7421
AT5G09800			ARM repeat superfamily protein...		Potri.005G057500 [exp]	15.49	0.7381

Compare expression of checked genes

Potri.008G112600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.