Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68940 927 / 0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT1G20780 439 / 1e-139 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G76390 439 / 1e-139 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT5G42340 87 / 2e-17 PUB15 Plant U-Box 15 (.1) AT3G46510 82 / 9e-16 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 82 / 1e-15 AtPUB12 PLANT U-BOX 12 (.1) AT1G60190 74 / 3e-13 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1) AT1G71020 72 / 8e-13 ARM repeat superfamily protein (.1.2) AT1G29340 72 / 2e-12 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT1G10560 69 / 1e-11 ATPUB18 ARABIDOPSIS THALIANA PLANT U-BOX 18, plant U-box 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136500 [exp] 1585 / 0 AT1G68940 913 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.005G253400 [exp] 504 / 1e-164 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.002G007800 [exp] 499 / 2e-162 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.002G175800 [exp] 201 / 6e-53 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 180 / 3e-46 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.014G102000 [exp] 176 / 6e-45 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G079200 [exp] 157 / 8e-39 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.001G069501 [exp] 106 / 4e-23 AT1G68940 132 / 5e-31 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.001G024600 [exp] 100 / 2e-21 AT1G20780 107 / 1e-23 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013050 [exp] 1037 / 0 AT1G68940 900 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10029113 [exp] 674 / 0 AT1G68940 572 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10013216 [exp] 506 / 4e-163 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030734 [exp] 389 / 1e-122 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10029112 [exp] 219 / 6e-65 AT1G68940 214 / 5e-64 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10018246 [exp] 203 / 3e-53 AT1G76390 272 / 8e-78 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10040659 [exp] 196 / 4e-51 AT1G76390 286 / 1e-82 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10005988 [exp] 171 / 3e-43 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030224 [exp] 145 / 3e-35 AT1G20780 127 / 1e-29 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Lus10039402 [exp] 118 / 1e-26 AT1G76390 157 / 4e-39 plant U-box 43, ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0020 [poplar] [flax] TPR PF02985 [poplar] [flax] HEAT HEAT repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.008G112900.3 pacid=42806642 polypeptide=Potri.008G112900.3.p locus=Potri.008G112900 ID=Potri.008G112900.3.v4.1 annot-version=v4.1 ATGTCGCCCAGCAAAAATTCAACTTCATCTGCTAGTATTGCCAAACACTTGCTGACATTAATTTCGGAGATCATTGAATCTATTACATGGGTGGAAATAG AAAAGGAAAACTTGGCTGAAATTGGATGCTACCTTTACCGAATTTGCCCAGTCATAATGGAGTTGCAGAAAGCTGAGTACACCACGAATAATGCAACAGA AATCCTTCAATCCCTATCCAGAAGCATCACCGAGGCCAAGGATCTTGTAAACAAATGCCAAAGAGGCACCATCTCAAATTCTGAATCTGAACTGAAAAGC AACATGTCACATCTGGAAAGGGTGATAAAAGAGATGGGCGCATGCTTGACCTTGATACCTTCATCAACATTTCAAGGCCAAGAATACGCAGAAGTTTCAG TTCAAGCTCTTTCAAATGAAATGTTGAGTGCTCACTTTGAAGTTGGCCAAAGCCAAGGATTGCAGACCAAAGAGCTGGATCCACACAAGAATTTCTCAGA GGAGGGACGAAACGAAGAATCTGTAACAATAGAATCAGATCTCTACCGTGCCAGTGTTGAAGAGTCCACAGATAATTCTCGGGAACTAAATGATCCAGAC TTTGTAGAATTCCTGAAACCCACAAGTCTCTGCAGGCCAAGGAAACACATCAGCAGTAGCAGCTCATCAACATCATTGGCAAGGATGACTGATCATATGG AGCCTTTGTATCAAACTTTCTACTGTCCATTAACGAAGCAGATCATGGATGATCCAGTGACCTTACAAAGTGGAGTGACATATGATAGGAAAGCAATTAC CGAGTGGTTGGAAGAGTCCGATAACTCGCAGGGAATTTTCTGCCCAACCACAGGGCAGAAGTTGCTGAGCAGAGTTCTAAAAACAAATGTAGCTCTCAAG ACCACAATAGAGGAATGGAAAGAAAGAAACGAGGTAGCAAGGATAAATATTTCACGTTCAGCTTTATTTGTGTCTGCTTCACCGAGTATGGTGCTTGAAG CAATAAGGGATTTGCAAGACATCTGCAAAAGGAAACAGTATAATAAGATACAAGTTCACAATGCTGGAATACTTCCATTGCTTTGTAAGCTTCTGAAGTA CAAAGATAGAGATGTTAGATATGCAGCACTGGAGTTATTACAAGAGTTGACAAAAGAGGATGATGATTCCAAGATAATGATATCTGAAATGGTGGACATG CCAACAGTAATCAAGATGATGTCAAGTGGTCACCAGCCCATAAGGCATGCAGCATTACTACTACTACTTGAGCTATCAAGGTCCGAATCATTGCAGGAGA AAATTGGGTCAGTTCCTGGAGGAATTCTGATGCTGATCAGAATAAAATACAATCAGCCTGATGATGCCTTCTCTTCAGAAAAAGCAGATGAAATCTTAAA GAATCTAGAGAGTTCTCCAGAAAATATCAAGAAGATGGCAGAAAATGGACTCTTGGAACCCCTTCTAAAGCATCTCACTGAAGGTTCCGAGGAAATGCAG ACAGAAATGGCAGAATACCTTGGGGAAATTTCACTTGGAAATGACAGAGACACTTATGTGGCTGAGAGGGCTTCTCCACCTCTTATCAAAATGGTGCATG GTGGAAACACTCTGACCAGAACAGCAGCATTCAAAGCTCTAGCAAAAATCGCATCCTGCCATCCTAATGCCAAAATACTTGCAAAATCTGGAATCATTCA AATTATGGTTGAAGAGATGTTCACTCGAAGAATCTACGGTGAACCAATAAACTCAAAAAGTGAAGCCGCTGCAATGCTAGCAAATATACTTGAGGCTGGG CTTGACCTTGAGAACCTCCAAGTAAATTCTCACGGCCACAGATTAGCTTCAGACTATGTTCTGTATAACTTCATTGAGATGATCAAGCATTCCACTCCTG ATGACCTCAACATCAATCTCATTAGAATTCTTTTGTGCCTGGCGAAGTCTCCCAGATCAATGAGCACCATTGTCTCCATGGTCAAAGAGAGTGAAGCAAG CTACACCCTGGTTGAACTCCTCAATAACCCCCATGAAGAACTTGGGATCGCAGCAATCAAGCTTCTTATCGTGCTCATACCTTACATGGGACACATTATA GTAGAGAGACTATGCAAAACTGCGGGTCAACCCGAGAACTTAATCCTTGGCAGAAATGAAACAACCCGAATCACACAGAAGCAGGCAGTTTCATCAACAT TTCTTGCTAAACTCCCCCACCAGAGCCTGACACTAAATCTCGCTCTTCTCAGAAAGAATACAGTCCCTGCAATCTTACAACAAATCAATCAAATCCAAGG AACCTGTATAAGAACAGGCAGGTATGTAATTCCTTACTTAGAAGGACTAGTAAGCATTCTGGTCAGATTCACGACCACACTTTACGAACCTCAAATGCTG TTTCTAGCAAGAGACTACAACTTCACCTCAGTATTCACAGAACTGCTCATGAAAACATCAAGTGATGAAGTTCAGAGGTTATCAGCAATTGGATTGGAGA ATCTCTCGTTGGAATCCATAAATTTATCAAAACCACCACAAATAAAGAAAACCAAGTTCTTGAAACTCTTCTACCCGCCGAAATTCCTGTCTTCCATTTC ATCAAAAAAGAGACAACTACCTTTGTGCCCGGTCCATAGAGGGGCTTGTTCCTCGCAAAACACATTCTGTTTAGTTGACGCAAAAGCAGTGGAGAGATTG CTGGCATGTTTGGACCATGAAAATGTTGAGGTTGTTGAAGCTGCTTTGTCAGCAGTATGTACTTTATTAGATGACGAAGTTGATGTTGAGATGAGTGTTG GCATGTTGTGTGAAGTGAATGCCATCCAACTTGTTCTGAATGCTGTGAAAGAACACAAGGGAGAAGGTTTATGGAAAAAATCCTTCTGGTTAATTGATAG ATTCTTGGTAAAAGGAGGGAGTAGGTGTGCTTCAGATATATCACAGGACAGGTTGTTACCTGCCACTCTGGTCAATGCTTTTCACCATGGGGATATTGAT ACAAGGCAGATGGCTGAGCGGATCTTGAGGCATTTGAATAAGATGCCTAATTTCCCTACTTCCCACTATACTATGTAG
AA sequence Show only first row Show all	>Potri.008G112900.3 pacid=42806642 polypeptide=Potri.008G112900.3.p locus=Potri.008G112900 ID=Potri.008G112900.3.v4.1 annot-version=v4.1 MSPSKNSTSSASIAKHLLTLISEIIESITWVEIEKENLAEIGCYLYRICPVIMELQKAEYTTNNATEILQSLSRSITEAKDLVNKCQRGTISNSESELKS NMSHLERVIKEMGACLTLIPSSTFQGQEYAEVSVQALSNEMLSAHFEVGQSQGLQTKELDPHKNFSEEGRNEESVTIESDLYRASVEESTDNSRELNDPD FVEFLKPTSLCRPRKHISSSSSSTSLARMTDHMEPLYQTFYCPLTKQIMDDPVTLQSGVTYDRKAITEWLEESDNSQGIFCPTTGQKLLSRVLKTNVALK TTIEEWKERNEVARINISRSALFVSASPSMVLEAIRDLQDICKRKQYNKIQVHNAGILPLLCKLLKYKDRDVRYAALELLQELTKEDDDSKIMISEMVDM PTVIKMMSSGHQPIRHAALLLLLELSRSESLQEKIGSVPGGILMLIRIKYNQPDDAFSSEKADEILKNLESSPENIKKMAENGLLEPLLKHLTEGSEEMQ TEMAEYLGEISLGNDRDTYVAERASPPLIKMVHGGNTLTRTAAFKALAKIASCHPNAKILAKSGIIQIMVEEMFTRRIYGEPINSKSEAAAMLANILEAG LDLENLQVNSHGHRLASDYVLYNFIEMIKHSTPDDLNINLIRILLCLAKSPRSMSTIVSMVKESEASYTLVELLNNPHEELGIAAIKLLIVLIPYMGHII VERLCKTAGQPENLILGRNETTRITQKQAVSSTFLAKLPHQSLTLNLALLRKNTVPAILQQINQIQGTCIRTGRYVIPYLEGLVSILVRFTTTLYEPQML FLARDYNFTSVFTELLMKTSSDEVQRLSAIGLENLSLESINLSKPPQIKKTKFLKLFYPPKFLSSISSKKRQLPLCPVHRGACSSQNTFCLVDAKAVERL LACLDHENVEVVEAALSAVCTLLDDEVDVEMSVGMLCEVNAIQLVLNAVKEHKGEGLWKKSFWLIDRFLVKGGSRCASDISQDRLLPATLVNAFHHGDID TRQMAERILRHLNKMPNFPTSHYTM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68940			Armadillo/beta-catenin-like re...		Potri.008G112900 [exp]	0	1
AT3G58000			VQ motif-containing protein (....		Potri.016G046000 [exp]	12.00	0.8421
AT5G47580		ASG7	ALTERED SEED GERMINATION 7, un...		Potri.001G123100 [exp]	23.87	0.7665
AT1G21326			VQ motif-containing protein (....		Potri.002G070600 [exp]	69.33	0.8044
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Potri.010G061401 [exp]	72.37	0.7994
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.010G061600 [exp]	87.17	0.7443
					Potri.001G425600 [exp]	110.63	0.7754
AT3G46900		COPT2	copper transporter 2 (.1)		Potri.006G093200 [exp]	116.31	0.7773
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.007G095000 [exp]	118.08	0.7822
					Potri.015G139966 [exp]	139.59	0.7476
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Potri.009G026900 [exp]	140.74	0.7748

Compare expression of checked genes

Potri.008G112900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.