Plant FIBer expression Database

Potri.008G113000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37240 62 / 1e-10 Thioredoxin superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G136300
[exp]
716 / 0 AT2G37240 62 / 8e-11 Thioredoxin superfamily protein (.1)
Potri.006G133100
[exp]
67 / 3e-12 AT2G37240 325 / 6e-113 Thioredoxin superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029111
[exp]
635 / 0 AT2G37240 61 / 2e-10 Thioredoxin superfamily protein (.1)
Lus10030582
[exp]
618 / 0 AT2G37240 64 / 3e-11 Thioredoxin superfamily protein (.1)
Lus10030907
[exp]
612 / 0 AT2G37240 64 / 3e-11 Thioredoxin superfamily protein (.1)
Lus10013051
[exp]
612 / 0 AT2G37240 60 / 4e-10 Thioredoxin superfamily protein (.1)
Lus10014017
[exp]
69 / 8e-13 AT2G37240 316 / 1e-109 Thioredoxin superfamily protein (.1)
Lus10019900
[exp]
56 / 7e-09 AT2G37240 214 / 7e-70 Thioredoxin superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0172 Thioredoxin PF13911 AhpC-TSA_2 AhpC/TSA antioxidant enzyme
Representative CDS sequence
>Potri.008G113000.1 pacid=42806550 polypeptide=Potri.008G113000.1.p locus=Potri.008G113000 ID=Potri.008G113000.1.v4.1 annot-version=v4.1
ATGGCTTCTTTCTCAGTGGAAGATTTTGTAGGTAACGGAGTTTTGAAGGACTTGCTTCCAACGTTGTTGAAAGAAGGTTGGGATGATGTACCAACTTTGA
AGATTATGAATAAAGAGGATACGGATGCAATGAACATGACACAACAGCAAAAGGATGCATTGGAAATCAGGTCATACCTGCATGATCGTGCTCTACTGCA
ATATGGGGATAAGCTGGAGGCCTCTGGGAAATGTTTGCCCGAGCTTCTTAGCATAAGCACTGTGGATCTCTCCTCTCAGTTTGGGATGAAGAGAGGTCAC
ATAGCCCGTTTCGTGGACAGAACCAGTGCATGTGCAGATCCTTTGCTCAAATCATACGCTCCTCTCACTGCAAGGAACAGGAACAGCATAGTCTCCAGAA
ACAATAGCAATTTCAAGAGTTATGCATCTGTCAACTCAAGGAAGATTCAAGCCAGTAGTAGTATGAATCATGATAAACCACTTGAACAATCACTCGCTGA
TTTTAAGATTAAAGATGATCACATCTTTAAAGGGATTGTAGCTGCAGGGCCAGCTGAGCCCAGAGCATGTGGCTGTGTACAACCGCCTCCTGTAGTTGAC
AGTGTTGCCCCTTATTCTGCTATTGAAAACATCTCAGTTCAGAAACTAACACCAGAGTATAAGATTGGGATGGAGCGTCTGGTGAAAACCAAGACACCTC
CAATGAAGGCTTCAGAATTATGGCGAGATAAACCAGCAGTACTCCTTTGCATCAGGCGACCTGGGTGCATCATGTGCAGGGCTGAGGCTCACCAGCTTTA
TGCCAAAAAACCCATATTTGATGCACTGGGAATTCGACTATTTGCAGTTCTCCATGAACATATTGAGTCAGAGGTCAAAAACTTCTGGCCTCGATATTGG
GGTGGTGTTGTGCTCTTTGATAGGAGTATGAAGTTCTTCAAAGCTCTTGGTGGTGGGCAGCTACTTAAGGACAGTTTTATTTCAGGATTTATTTTCAATC
CCCGAGCTATTGCAAATTACAAGCGTGCAAAAGCTACAGGAAGTGAGCAAAACTTCAAAGGAGAAGGTGAAATAAAGGGTGGACTCTTTATAGTTGGCAG
GGAAAAGAGTGGCATAGCTTATCAGTTCATTGAGAGGAACTTTGGTGATTGGGCTCCTCTAGCTGAAGTAATTGACATATGTAGCAAGTTGCAGAACCAG
CAGCAAAGTCAAGAGGAGTCCATCAAAACATCACAGCAATATGAATGA
AA sequence
>Potri.008G113000.1 pacid=42806550 polypeptide=Potri.008G113000.1.p locus=Potri.008G113000 ID=Potri.008G113000.1.v4.1 annot-version=v4.1
MASFSVEDFVGNGVLKDLLPTLLKEGWDDVPTLKIMNKEDTDAMNMTQQQKDALEIRSYLHDRALLQYGDKLEASGKCLPELLSISTVDLSSQFGMKRGH
IARFVDRTSACADPLLKSYAPLTARNRNSIVSRNNSNFKSYASVNSRKIQASSSMNHDKPLEQSLADFKIKDDHIFKGIVAAGPAEPRACGCVQPPPVVD
SVAPYSAIENISVQKLTPEYKIGMERLVKTKTPPMKASELWRDKPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIRLFAVLHEHIESEVKNFWPRYW
GGVVLFDRSMKFFKALGGGQLLKDSFISGFIFNPRAIANYKRAKATGSEQNFKGEGEIKGGLFIVGREKSGIAYQFIERNFGDWAPLAEVIDICSKLQNQ
QQSQEESIKTSQQYE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G37240 Thioredoxin superfamily protei... Potri.008G113000
[exp]
0 1
AT2G20030 RING/U-box superfamily protein... Potri.018G042501
[exp]
2.64 0.9712
AT3G50700 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1... Potri.001G069948
[exp]
3.46 0.9617
AT4G10780 LRR and NB-ARC domains-contain... Potri.001G405025
[exp]
3.46 0.9529
AT3G03450 GRAS RGL2 RGA-like 2 (.1) Potri.010G143500
[exp]
4.89 0.9611
AT5G10530 Concanavalin A-like lectin pro... Potri.001G284200
[exp]
5.47 0.9388
AT2G38310 RCAR10, PYL4 regulatory components of ABA r... Potri.008G073400
[exp]
5.65 0.9502
Potri.012G125400
[exp]
8.00 0.9372
AT5G60900 RLK1 receptor-like protein kinase 1... Potri.001G228200
[exp]
13.22 0.9504
AT5G59730 ATEXO70H7 exocyst subunit exo70 family p... Potri.009G026900
[exp]
13.30 0.9118
AT1G05160 ATKAO1, CYP88A3 ENT-KAURENOIC ACID OXYDASE 1, ... Potri.012G071200
[exp]
13.74 0.9444

Potri.008G113000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.