Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68920 388 / 1e-129 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G26260 235 / 9e-72 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT3G07340 178 / 1e-49 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G10120 173 / 8e-49 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G23690 168 / 1e-46 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G34530 164 / 1e-45 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT2G18300 156 / 1e-42 bHLH bHLH064, HBI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G59640 150 / 1e-41 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT5G50915 147 / 6e-40 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G36540 147 / 6e-40 bHLH bHLH058, BEE2 BR enhanced expression 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136100 [exp] 991 / 0 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G235400 [exp] 231 / 3e-68 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 219 / 7e-64 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G248500 [exp] 210 / 2e-60 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G114700 [exp] 182 / 1e-51 AT1G10120 274 / 3e-89 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G146500 [exp] 182 / 2e-51 AT1G10120 266 / 3e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G156000 [exp] 172 / 8e-48 AT4G34530 206 / 1e-62 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.009G117300 [exp] 171 / 4e-47 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.005G121850 [exp] 155 / 5e-42 AT4G34530 177 / 3e-52 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030581 [exp] 560 / 0 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 553 / 0 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10029110 [exp] 496 / 2e-171 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10013052 [exp] 492 / 5e-170 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10006491 [exp] 174 / 8e-49 AT1G10120 213 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012484 [exp] 171 / 3e-48 AT1G10120 202 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023562 [exp] 167 / 4e-47 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10003172 [exp] 167 / 6e-47 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10040448 [exp] 166 / 1e-46 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Lus10002337 [exp] 163 / 2e-44 AT5G48560 258 / 7e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G113200.1 pacid=42808557 polypeptide=Potri.008G113200.1.p locus=Potri.008G113200 ID=Potri.008G113200.1.v4.1 annot-version=v4.1 ATGGATATGAGTGACAAGGATAAATTTGAGTTAGAAGAGAGCAATGATAATCCTATCAACTACCGTTCACCTGGTGGTATGTCCTTAGACCGGCGATTTA ACAGTACAAGTATCCCAAATTCATCTCTGGGTTTGGTCCCCACTGATAATCAGATGTCAGTTTGTAGAGGGGATCTAGCAGAAGCAGTTGCTGCTTCTTG CTCTTCTGCTTCTGTGATAGATTCATTTGGGCCAGCCATGTGGGAACATCCCACCAATTCACAGAACTTGGTTTTTTGTGATATTAATGTTCAGAATATT GCAAGCAGTTCAAACACGGCAGGGATTGGAAAAGGATTCCCTGCTTCATTGAGAAATGGTATTGATAGAACACTAGAAATGGGGTGGAATCCACCTAATC CAATGCTGAAAGGTGGAAATTTCTTGCCAAATGCCTCTGGGATGCTCCCACAAAGCTTATCACAGTTTCCTGCTGATTCTGCATTCATTGAGCGCGCTGC CAGGTTTTCGTGCTTCAATGGTGGAAATTTTAGTGATATGGGGAACCCTTTTGGAGTTCCTGAGAGTATGGGTATTTTCTCGAGGGGCGGGGGGATGATG CAGGGACCAGGAGAGGTGTTCATGGGCAGTGGGATGAAATCAGTATCTGGGGGACGAGCTCCTAAGAATGTTATGAATGCCGTTGAAGCTTCCAAAGATG TTTCTATGTCTGTTAACCATATGGCTACGGAAGGGAGCCCTCTCAAGAATGAGACAAAAAGTGAGAGCCTCGCGAGATCTCGTGATGAAGCAAAACAAGG TATGGGTGGGTCTGGTAATGACTCTGATGAAGCTGAATTCAGTGGTGGTGGTGGTCAAGATGAACCGTCAATGTTGGAGGGCAACTGTAGGGAACTTTCA GCTAAGAGCCTCGGCTCAAACAAAAGAAAGAGGAACGGACAGGATGCTGAGCTTGATCAGGCCAAGGGAACCCCTCAATCTGCTGAACCTGCAAAGGGTA GCCCTGAAACTCAACAGAAAGGAGACCAAAAACCAACTTCAACTACCAGCAAGGATGCTGGTAAACAAGGTAAGCAGGGATCTCTTGGTTCAGATCAACC AAAAGAAGAATATATTCATGTCAGAGCTCGAAGAGGCCAGGCAACAAACAGCCATAGTCTTGCAGAAAGAGTGAGAAGGGAAAAGATCAGTGAAAGGATG AAGTTTCTACAGGACCTTGTACCTGGTTGCAGCAAGGTCACAGGGAAGGCAGTGATGCTAGATGAAATCATTAACTATGTGCAATCACTGCAGCGGCAGG TTGAGTTTCTATCAATGAAACTTGCAACAGTGAATCCGAGGCTGGATTTGAACATAGAAGGACTCCTTGCAAAAGATGTGTTTGATCCCAAGATTCTTCA GTTGCATGCTGTTCCTCCATCCTCTCTGGCATTTTCCTTGGAGATGCCTATGGCTTATCCCCCATCACATCCATCTCAAGCAGGACTTATTCCCACAGCT TTTCCTGGAATGAACAATCACTCTGACATAATATGTAGAACCATTAATTCCCAATTGACACCCATGACTGCAGGATTCAAGGAACCTGCTCAGCTACCCA ATGTATGGGATGATGAGCTCCGCAATGTTGTCCAGATGAGCTATGAAACCAGTGCTCCCCACGACAGCCAAGATGTAAATAAGCCACTGCCACCAGGCCA TTTGAAAGTTGAGCTTTAA
AA sequence Show only first row Show all	>Potri.008G113200.1 pacid=42808557 polypeptide=Potri.008G113200.1.p locus=Potri.008G113200 ID=Potri.008G113200.1.v4.1 annot-version=v4.1 MDMSDKDKFELEESNDNPINYRSPGGMSLDRRFNSTSIPNSSLGLVPTDNQMSVCRGDLAEAVAASCSSASVIDSFGPAMWEHPTNSQNLVFCDINVQNI ASSSNTAGIGKGFPASLRNGIDRTLEMGWNPPNPMLKGGNFLPNASGMLPQSLSQFPADSAFIERAARFSCFNGGNFSDMGNPFGVPESMGIFSRGGGMM QGPGEVFMGSGMKSVSGGRAPKNVMNAVEASKDVSMSVNHMATEGSPLKNETKSESLARSRDEAKQGMGGSGNDSDEAEFSGGGGQDEPSMLEGNCRELS AKSLGSNKRKRNGQDAELDQAKGTPQSAEPAKGSPETQQKGDQKPTSTTSKDAGKQGKQGSLGSDQPKEEYIHVRARRGQATNSHSLAERVRREKISERM KFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDLNIEGLLAKDVFDPKILQLHAVPPSSLAFSLEMPMAYPPSHPSQAGLIPTA FPGMNNHSDIICRTINSQLTPMTAGFKEPAQLPNVWDDELRNVVQMSYETSAPHDSQDVNKPLPPGHLKVEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Potri.008G113200 [exp]	0	1
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Potri.006G005900 [exp]	6.00	0.7262	Pt-AHA6.2
					Potri.011G153800 [exp]	16.91	0.7022
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.017G135800 [exp]	19.33	0.7291
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.009G018800 [exp]	30.16	0.6650
AT4G21780			unknown protein		Potri.011G000400 [exp]	35.88	0.7146
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Potri.014G073700 [exp]	36.24	0.6812
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.010G234700 [exp]	40.12	0.7019	CTR1.4
					Potri.010G070301 [exp]	41.13	0.7093
AT2G31980		AtCYS2	PHYTOCYSTATIN 2 (.1)		Potri.002G235800 [exp]	44.36	0.5720
AT4G19010			AMP-dependent synthetase and l...		Potri.003G099700 [exp]	60.92	0.6540	Ptr4CL13

Compare expression of checked genes

Potri.008G113200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.